View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_22 (Length: 228)
Name: NF5588_low_22
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_22 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47266062 - 47265835
Alignment:
| Q |
1 |
aaaaatcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggt |
100 |
Q |
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| T |
47266062 |
aaaaatcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggt |
47265963 |
T |
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| Q |
101 |
aataagataggaacctatctatgtatgaaacagcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaatcaatat |
200 |
Q |
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| T |
47265962 |
aataagataggaacctatctatgtatgaaacagcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaatcaatat |
47265863 |
T |
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| Q |
201 |
tcctctcatttttggatcaatgtctctc |
228 |
Q |
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| T |
47265862 |
tcctctcatttttggatcaatgtctctc |
47265835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 47258662 - 47258486
Alignment:
| Q |
32 |
agaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataagataggaacctatctatgtatgaaac |
131 |
Q |
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| T |
47258662 |
agaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatatatctatgtatgatac |
47258563 |
T |
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| Q |
132 |
agcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaatcaatattcctctca |
208 |
Q |
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| T |
47258562 |
agcaagatgaagtgtatcattatgaagcttgtattcttcagcaacttctactaaccaatccaccaattttcctctca |
47258486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 47249720 - 47249767
Alignment:
| Q |
36 |
ggcttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
83 |
Q |
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| T |
47249720 |
ggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagctt |
47249767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47242893 - 47242938
Alignment:
| Q |
38 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
83 |
Q |
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| T |
47242893 |
cttacgatgcaatgagcatggatgaaacaccaagcaactgaagctt |
47242938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47254150 - 47254195
Alignment:
| Q |
38 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
83 |
Q |
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| T |
47254150 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagctt |
47254195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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