View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_3 (Length: 436)
Name: NF5588_low_3
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 10397332 - 10397740
Alignment:
| Q |
18 |
gatgaaatagggttcattggaggacgacatggatgatatgaatgagattatgagtgattctttcgtagggttaaagaatttgaagaattgtgttgttgac |
117 |
Q |
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| T |
10397332 |
gatgaaatagggttcattggaggacgacatggatgatatgaatgagattatgagtgattctttcgtagggttaaagaatttgaagaattgtgttgttgac |
10397431 |
T |
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| Q |
118 |
atttcatttatatatagagnnnnnnnttcaagagtcttgattagtcaaggtgaacactgttgannnnnnncttttgactcaagaaccactggtttgaatt |
217 |
Q |
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| T |
10397432 |
atttcatttatatagagagaaaaaaattcaagagtcttgattagtcaaggtgaacactgttgatttttttcttttgactcaagaactactggtttgaatt |
10397531 |
T |
|
| Q |
218 |
agataacttcaattatggttataattttatttgaaggcacaattatacttgannnnnnnnnnngactcatagcacaattatagttaaaatgtaaataggc |
317 |
Q |
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| T |
10397532 |
agataacttcaattatggttataattttattttgatgcacaattatacttga--ttgttttttgactcaaagcacaattatagttaaaatataaatatgc |
10397629 |
T |
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| Q |
318 |
ggaagagtgaaaaacttttataacaacattttcattgacttttg-nnnnnnnnngccgacatatatgcaatgaaaaattaatttattcaaaggtaaaatt |
416 |
Q |
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| T |
10397630 |
ggaagagtgaaaaacttttataacaacattttcgtgtacttttgttttttttttgccgacatatatgcaatgaaaaattaatttattcaaatgtaaaatt |
10397729 |
T |
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| Q |
417 |
caagccatttt |
427 |
Q |
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| T |
10397730 |
caagccatttt |
10397740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 10407552 - 10407961
Alignment:
| Q |
18 |
gatgaaatagggttcattggaggacgacatggatgatatgaatgagattatgagtgattctttcgtagggttaaagaatttgaagaattgtgttgttgac |
117 |
Q |
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| T |
10407552 |
gatgaaatagggttcattggaggacgacatggatgatataaatgagattatgagtgattctttcgtagggttaatgagtttgaaaaattgagttgttggc |
10407651 |
T |
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| Q |
118 |
atttcatttatatatagagnnnnnnntt---caagagtcttgattagtcaaggt-gaacactgttgannnnnnncttttgactcaagaaccactggtttg |
213 |
Q |
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| T |
10407652 |
atttcatttatatagagagataaaaaataaaaaatagtcttgattagtcaaggtggaacactgttgatttatttcttttgactcaaaaactattggtttg |
10407751 |
T |
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| Q |
214 |
aattagataacttcaattatggttataattttatttgaaggcacaattatacttgannnnnnnnnnngactcatagcacaattatagttaaaatgtaa-- |
311 |
Q |
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| T |
10407752 |
aattagttaacttcaattatggttataattttattttgatgcacaattatacttta-ttgtttttttgactcatagcacaattatagttaaaatgtaaat |
10407850 |
T |
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| Q |
312 |
ataggcggaagagtgaaaaacttttataacaacattttcattgacttttgnnnnnnnnngccgacatatatgcaatgaaaaattaatttattcaaaggta |
411 |
Q |
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||| ||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||| |||||| ||| | |||||||||||| || |
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| T |
10407851 |
atatgcggaagagtg-aaaacttttttaacaacattttcattgacttttg--tttttttgctgacatataagcaatgcaaattcaatttattcaaatcta |
10407947 |
T |
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| Q |
412 |
aaattcaagccatt |
425 |
Q |
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| T |
10407948 |
aaattcaagccatt |
10407961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10402197 - 10402285
Alignment:
| Q |
18 |
gatgaaatagggttcattggaggacgacatggatgatatgaatgagattatgagtgattcttt-cgtagggttaaagaatttgaagaat |
105 |
Q |
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| T |
10402197 |
gatgaaatagggttcattggaggacgacatggatgatatgaatgagattatgagtgattctttccatagggttaaagaatttgaagaat |
10402285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 10429656 - 10429736
Alignment:
| Q |
17 |
agatgaaatagggttcattggaggacgacatggatgatatgaatgagattatgagtgattctttcgtagggttaaagaatt |
97 |
Q |
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|||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10429656 |
agataaaataggattcagtagaggacgacatggatgatatgaatgagattatgagtgattcttcactagggttaaagaatt |
10429736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 10402385 - 10402451
Alignment:
| Q |
290 |
cacaattatagttaaaatgtaaataggcggaagagtgaaaaacttttataacaacattttcattgact |
357 |
Q |
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| T |
10402385 |
cacaattatagttaaaatgtaattatgcggaagagtg-aaaactttttgaacaacatttgcattgact |
10402451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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