View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_5 (Length: 373)
Name: NF5588_low_5
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 24782312 - 24781975
Alignment:
| Q |
23 |
taactcatgtcttccatcagaactcaaagccctacaagccataaaagcctcactccgtgaacctaacgacggagtattcaactcatggaccggaactgac |
122 |
Q |
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| T |
24782312 |
taactcatgtcttccatcagaactcaaagccctacaagccataaaagcctcactccgtgaacctaacgacggaatattcaactcatggaccggaactgac |
24782213 |
T |
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| Q |
123 |
tgctgccacaactggttgggcgtatcatgcgacgagaatactcgtcgtgtagccgatataaacctccgtgccggaactctctacaccaccttcgaaaaag |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24782212 |
tgctgccacaactggttgggcgtatcatgcgacgagaatactcgtcgcgtagccgatataaacctccgtgccggaactctctacaccaccttcgaaaaag |
24782113 |
T |
|
| Q |
223 |
cacgtaaacctggctacatgaccggtcaaatctccccggagatttgtaagctaactcaactttcaagcattacaatcactgattggaacggtatctccgg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24782112 |
cacgtaaacctggctacatgaccggtcaaatctccccggagatttgtaagctaactaaactttcaagcattacaatcactgattggaacggtatctccgg |
24782013 |
T |
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| Q |
323 |
tgagatccccaagtgcatttcttcactttctttccttc |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24782012 |
tgagatccccaagtgcatttcttcactttctttccttc |
24781975 |
T |
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