View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_6 (Length: 362)
Name: NF5588_low_6
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 13081544 - 13081887
Alignment:
| Q |
1 |
gcgaattaccagttgtggctcagaccctttaccgacgagaactggagacgaatctccaacgttgttcaaccaacaaaatctctacgtagtcccatgaagg |
100 |
Q |
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| T |
13081544 |
gcgaattaccagttgtagctcagaccctttaccgacgagaactg-agacgaatctccaacgttgttcaaccaacaaaatctctatgtagtcccatgaagg |
13081642 |
T |
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| Q |
101 |
ctgaagctcctaactaaatgataatctccaaatatatatattcaagatttccactgcattttcttaattagaaagttaatctccaaaataaacattaccc |
200 |
Q |
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| T |
13081643 |
ctgaagttcctaactaaatgataatctccaaatat----attcaagatttccactgcattttcttaattagaaagttaatctccaaaataaacattaccc |
13081738 |
T |
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| Q |
201 |
aaattcaaagtttacttaccatttcaaaatcagtttatgatccttaagtaatgatctgaagccttgtgtaggtttggacaaggaaaaccacctttagcaa |
300 |
Q |
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| T |
13081739 |
aaattcaaagtttacttaccatttcaaaatcagtttatgatccttaagaaatgatctgaagccttgtgtaggtttggacaaggaaaaccacctttagcaa |
13081838 |
T |
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| Q |
301 |
aaaactgcagaatcaattgtcactatgtatcatataacttgagtataat |
349 |
Q |
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| T |
13081839 |
aaaactgcagaatcaattgtcactatgtatcatataacttgagtataat |
13081887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 343
Target Start/End: Complemental strand, 37291759 - 37291619
Alignment:
| Q |
209 |
agtttacttaccatttcaaaatca--gtttatgatccttaagtaatgatctgaagccttgtgtaggtttggacaaggaaaaccacctttagcaaaaaact |
306 |
Q |
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| T |
37291759 |
agttttcttaccatttcaaaatctttgtttatgatccttaaatagtgatcagaaggattgtggagagttggacaaggaaaaccatttgcagcaaaaaact |
37291660 |
T |
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| Q |
307 |
gca--gaatcaattgtca--ctatgtatcatataacttgag |
343 |
Q |
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| T |
37291659 |
gcatcgaatcaagtgtcacgctatgtataatataatttgag |
37291619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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