View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589-Insertion-3 (Length: 987)
Name: NF5589-Insertion-3
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 208 - 720
Target Start/End: Original strand, 31506076 - 31506588
Alignment:
| Q |
208 |
ctctgaacatggattagtttataaagctgaagaggaggacaaagtgaaagggacatgggaaaggaaaagaaaatgatgtttaatggttctttttgtacca |
307 |
Q |
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| T |
31506076 |
ctctgaacatggattagtttataaagctgaagaggaggacaaagtgaaagggacatgggaaaggaaaagaaaatgatgtttaacggttctttttgtacca |
31506175 |
T |
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| Q |
308 |
aaatctcaattttattttgcttgggactcgtatcaattggtgtggccaaatacagtgccctttatcatcgatattagtccttctcacatgctaacactca |
407 |
Q |
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| T |
31506176 |
aaatctcaattttattttgcttgggactcgtttcaattggtgtggccaaatacagtgccctttatcatcgatattagtccttctcacatgctaacactca |
31506275 |
T |
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| Q |
408 |
ctctctttatcaacttgttattgggccacttcattggaggattcaaaatatggaatcatgcttcatgctcactccatagtccatacccacccatacaaag |
507 |
Q |
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| T |
31506276 |
ctctctttatcaacttgttattgggccacttcattggaggattcaaaatatggaatcatgcttcatgctcactccatagtccatacccacccatacaaag |
31506375 |
T |
|
| Q |
508 |
attataatcaataataatcatgaattgaagcttcccatacatattttattatcttactatagctatagaatctggatcctcattcctatgaacctaacag |
607 |
Q |
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| T |
31506376 |
attataatcaataataatcatgaattgaagcttcccatacatattttattatcttactatagttatagaatctggatcctcattcctatgaacctaacag |
31506475 |
T |
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| Q |
608 |
tttcttaagctgcaacataataccgcagttgtggagaattcaattttgaaggaatgatacttttcttgttattaaagagtctagcagcaaaactcacata |
707 |
Q |
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| T |
31506476 |
tttcttaagctgcaacataataccgcagttgtggagaattcaattttgaaggaatgatacttttcttgttattaaagagtctagcagcaaaactcacata |
31506575 |
T |
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| Q |
708 |
cttaaagtgcata |
720 |
Q |
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| T |
31506576 |
cttaaagtgcata |
31506588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 722 - 987
Target Start/End: Original strand, 31506697 - 31506964
Alignment:
| Q |
722 |
ttgaggggactgatatagttaattgtgtaaaggtttttgataaagatttggtgttcaattactcaaagtagagtgtgatgatctcttatgcttgcctcat |
821 |
Q |
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| T |
31506697 |
ttgaggggactgatatagttaattgtgtaaaggtttttgataaagatttggtgttcaattactcaaagtagagtgtgatgatctcttatgcttgcctcat |
31506796 |
T |
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| Q |
822 |
aacgcaacatatatcaaatattcttacatcctactatcatttaagctgcactcacatgcagatacttttagatgacacattttttactaccaaatgagat |
921 |
Q |
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| T |
31506797 |
aacgcaacatatatcaaatattcttacatcctactatcatttaagctgcactcacatgcagatacttttagatgacaca-tttttactaccaaatgagat |
31506895 |
T |
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| Q |
922 |
ataatttattatcatatttttgtgtttggtac-agaacataattacaa--gaaaacctacaaactatga |
987 |
Q |
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| T |
31506896 |
ataatttattatcatatttttgtgtttggtacaagaacataattacaaagaaaaacctacaaactatga |
31506964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 31505870 - 31506026
Alignment:
| Q |
7 |
aaatatctctaatctaaacatacctcggcctgtgtttactatagtagttttccttaaacgaaaagcaactactagacaataataacatgaatgttatatt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31505870 |
aaatatctctaatctaaacatacctcggcctgtgtttactatagtagttttccttaaacgaaaggcaactactagacaataataacatgaatgttatatt |
31505969 |
T |
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| Q |
107 |
ac----taactgaggcttagttatagttttgcacattgttctaagcagttggtgaat |
159 |
Q |
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| T |
31505970 |
actaattaactgaggcttagttatagttttgcacattgttctaagcagttggtgaat |
31506026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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