View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589-Insertion-4 (Length: 667)

Name: NF5589-Insertion-4
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589-Insertion-4
NF5589-Insertion-4
[»] chr4 (29 HSPs)
chr4 (8-667)||(52986091-52986745)
chr4 (525-667)||(54626832-54626972)
chr4 (525-667)||(54862379-54862519)
chr4 (286-344)||(47789380-47789438)
chr4 (397-490)||(24418246-24418339)
chr4 (397-491)||(52831430-52831524)
chr4 (567-667)||(55635034-55635132)
chr4 (409-492)||(2733406-2733488)
chr4 (362-491)||(17425650-17425779)
chr4 (587-656)||(51315717-51315786)
chr4 (287-339)||(17425588-17425640)
chr4 (397-461)||(31736149-31736213)
chr4 (284-334)||(52327445-52327495)
chr4 (279-344)||(39276512-39276577)
chr4 (408-465)||(50570375-50570432)
chr4 (284-364)||(52831573-52831651)
chr4 (279-339)||(41173919-41173979)
chr4 (288-344)||(44555585-44555641)
chr4 (279-338)||(21501772-21501831)
chr4 (398-489)||(39276332-39276423)
chr4 (282-344)||(3535298-3535360)
chr4 (291-344)||(20530490-20530543)
chr4 (279-344)||(34812677-34812742)
chr4 (587-640)||(50192334-50192387)
chr4 (589-637)||(3672106-3672154)
chr4 (284-344)||(24418116-24418175)
chr4 (284-344)||(30802427-30802486)
chr4 (524-627)||(55659564-55659665)
chr4 (403-475)||(55723237-55723309)
[»] chr1 (25 HSPs)
chr1 (229-344)||(35058684-35058802)
chr1 (224-279)||(42747780-42747835)
chr1 (362-432)||(20791937-20792007)
chr1 (279-344)||(1714041-1714106)
chr1 (362-523)||(21516625-21516791)
chr1 (362-431)||(42747642-42747711)
chr1 (376-440)||(10518256-10518320)
chr1 (279-339)||(21516511-21516571)
chr1 (284-344)||(30173406-30173466)
chr1 (279-339)||(32348410-32348470)
chr1 (279-350)||(3160982-3161053)
chr1 (279-334)||(32602949-32603004)
chr1 (279-344)||(3949640-3949705)
chr1 (397-498)||(32602767-32602868)
chr1 (284-344)||(23908830-23908890)
chr1 (279-339)||(31117601-31117661)
chr1 (284-335)||(20791823-20791874)
chr1 (284-335)||(31795359-31795410)
chr1 (399-450)||(46315642-46315693)
chr1 (409-479)||(32359169-32359239)
chr1 (453-498)||(9496771-9496816)
chr1 (400-490)||(31117739-31117831)
chr1 (279-328)||(32359334-32359383)
chr1 (397-450)||(37131512-37131565)
chr1 (291-339)||(35926534-35926582)
[»] chr3 (9 HSPs)
chr3 (362-524)||(43822474-43822625)
chr3 (279-344)||(32582594-32582658)
chr3 (374-431)||(38684749-38684806)
chr3 (284-344)||(20873072-20873132)
chr3 (398-489)||(37334472-37334563)
chr3 (362-440)||(30837-30915)
chr3 (369-415)||(1384229-1384275)
chr3 (279-336)||(3729869-3729926)
chr3 (279-344)||(9198050-9198115)
[»] scaffold0010 (1 HSPs)
scaffold0010 (279-339)||(166743-166803)
[»] scaffold0022 (1 HSPs)
scaffold0022 (254-345)||(84828-84915)
[»] chr8 (16 HSPs)
chr8 (279-344)||(2111014-2111079)
chr8 (291-344)||(8407586-8407639)
chr8 (279-344)||(35764724-35764789)
chr8 (279-339)||(43408678-43408738)
chr8 (279-350)||(3346113-3346184)
chr8 (285-339)||(5111518-5111572)
chr8 (279-364)||(6078472-6078556)
chr8 (279-364)||(6082404-6082488)
chr8 (279-328)||(12524607-12524656)
chr8 (279-344)||(28947321-28947386)
chr8 (279-339)||(925986-926046)
chr8 (589-637)||(9889346-9889394)
chr8 (285-321)||(21367097-21367133)
chr8 (284-344)||(25019505-25019565)
chr8 (292-344)||(25099576-25099628)
chr8 (279-335)||(37740756-37740812)
[»] chr2 (19 HSPs)
chr2 (525-665)||(13401218-13401356)
chr2 (284-339)||(15967968-15968023)
chr2 (285-344)||(27679230-27679289)
chr2 (396-474)||(31062936-31063014)
chr2 (284-338)||(42139530-42139584)
chr2 (219-279)||(21722011-21722071)
chr2 (401-461)||(40909918-40909978)
chr2 (278-339)||(31063103-31063164)
chr2 (284-344)||(21721919-21721979)
chr2 (279-339)||(27863874-27863934)
chr2 (300-364)||(44984222-44984285)
chr2 (284-339)||(30804384-30804439)
chr2 (206-241)||(40809063-40809098)
chr2 (300-362)||(40910036-40910097)
chr2 (218-268)||(43613332-43613382)
chr2 (222-279)||(21938125-21938182)
chr2 (279-344)||(28249824-28249889)
chr2 (457-498)||(38356785-38356826)
chr2 (401-461)||(44984345-44984405)
[»] chr7 (15 HSPs)
chr7 (401-488)||(883719-883806)
chr7 (401-488)||(1243048-1243135)
chr7 (284-339)||(3837088-3837143)
chr7 (284-362)||(28175451-28175528)
chr7 (300-363)||(883864-883925)
chr7 (300-363)||(1243193-1243254)
chr7 (286-344)||(87160-87218)
chr7 (299-344)||(44235370-44235415)
chr7 (280-344)||(13438325-13438389)
chr7 (279-339)||(19683451-19683511)
chr7 (362-416)||(12473109-12473163)
chr7 (279-336)||(2525296-2525353)
chr7 (279-332)||(44235317-44235370)
chr7 (291-344)||(44571446-44571499)
chr7 (281-364)||(28543533-28543614)
[»] chr5 (13 HSPs)
chr5 (298-344)||(1621438-1621484)
chr5 (362-432)||(6462367-6462437)
chr5 (399-473)||(9004814-9004888)
chr5 (278-337)||(32046916-32046975)
chr5 (371-432)||(13838853-13838914)
chr5 (279-332)||(17902799-17902852)
chr5 (279-345)||(28363538-28363604)
chr5 (299-344)||(17259606-17259651)
chr5 (279-336)||(41892772-41892829)
chr5 (284-344)||(2942068-2942128)
chr5 (284-328)||(5390446-5390490)
chr5 (291-339)||(31677298-31677346)
chr5 (284-344)||(34640178-34640238)
[»] chr6 (7 HSPs)
chr6 (284-336)||(724711-724763)
chr6 (284-344)||(34544423-34544483)
chr6 (279-334)||(9749812-9749867)
chr6 (286-344)||(1288437-1288495)
chr6 (287-364)||(13692501-13692577)
chr6 (279-344)||(29052696-29052761)
chr6 (279-339)||(8014427-8014487)
[»] scaffold0004 (1 HSPs)
scaffold0004 (279-338)||(338918-338977)


Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Original strand, 52986091 - 52986745
Alignment:
Q  8 tatttctcaccatcttaaatacaaattgagtatgatgctttgaaagcagggtacaaattaagtattagagggcaaaattggaaggaaaaaagaattaatc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52986091 tatttctcaccatcttaaatacaaattgagtatgatgctttgaaagtagggtactaattaagtattagagggcaaaattggaaggaaaaaagaattaatc 52986190  T
Q  108 ttacattggaaggtgtaaatgacattccttttaaaaccattttttgttttgctagtgacatattcattttgaaatagagtgggtagaataaggctctctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52986191 ttacattggaaggtgtaaatgacattccttttaaaaccattttttgttttgctagtgacatattcattttgaaatagagtgagtagaataaggctctctt 52986290  T
Q  208 tggcaaaaataaataaatagcggatagctgataagctaacgtataacagatgacttataagctagcttatagattaaatttgtagtgtatggtaaaatta 307  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986291 tggtaaaaataaataaatagcggatagttgataagctaacgtatagtagatgacttataagctagcttatagattaaatttgtagtgtatggtaaaatta 52986390  T
Q  308 gcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaaaatggagataaaaagtgatatgctataagcgttaagctataaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986391 gcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtacttaattaaaatggagataaaaagtgatatgctataagcgttaagctataaa 52986490  T
Q  408 ctacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatcttttatagtcaca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  52986491 ctacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatctcttataatcaca 52986590  T
Q  508 cttataagctataagctatacctgctcccgaacatcatcatgaggtgaaccgagtagattgacaaacattggtactgctctccatgatcaattaccaccc 607  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||     
T  52986591 cttataagctataagctatacctg-tcccgaacatcatcatgaggtgaac----tagcttgacaaacattggtactgctctccatgatcaattaccacct 52986685  T
Q  608 tagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagcttcaaactaaa 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52986686 tagtgttcttagaagttccagctactatgtttgaaagtgccgaagtagcttcaaactaaa 52986745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 525 - 667
Target Start/End: Complemental strand, 54626972 - 54626832
Alignment:
Q  525 atacctgctcccgaacatcatcatgaggtgaaccgagtagattgacaaacattggtactgctctccatgatcaattaccaccctagtgttcttagaagtt 624  Q
    |||||||  |||||||||| |||   |||||||  || || |||||||||||||||||||| |  ||||||||| ||||||| ||||||||| |||||||    
T  54626972 atacctggccccgaacatcgtcacatggtgaactaagaagcttgacaaacattggtactgcgc--catgatcaactaccaccttagtgttctcagaagtt 54626875  T
Q  625 ccagctactatgtttgaaagtgccgaagcagcttcaaactaaa 667  Q
    |||||| |||||||||  |||||| ||||||| |||| |||||    
T  54626874 ccagctgctatgtttgtgagtgcccaagcagcctcaagctaaa 54626832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 525 - 667
Target Start/End: Original strand, 54862379 - 54862519
Alignment:
Q  525 atacctgctcccgaacatcatcatgaggtgaaccgagtagattgacaaacattggtactgctctccatgatcaattaccaccctagtgttcttagaagtt 624  Q
    |||||||  |||||||| |||||   |||||||  ||||| |||| ||| ||||||||||| |  ||||||||||||||||| |||||||||  ||||||    
T  54862379 atacctgtgcccgaacagcatcacttggtgaactaagtagcttgataaatattggtactgccc--catgatcaattaccaccttagtgttctccgaagtt 54862476  T
Q  625 ccagctactatgtttgaaagtgccgaagcagcttcaaactaaa 667  Q
    |||| | |||||||||  |||||| ||||||| ||||||||||    
T  54862477 ccagatgctatgtttgtgagtgcccaagcagcctcaaactaaa 54862519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 47789380 - 47789438
Alignment:
Q  286 tttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  47789380 tttgtagtgtttggtaaaattagcggttgaagttgcttctaaatacgaaatgacctaaa 47789438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 397 - 490
Target Start/End: Original strand, 24418246 - 24418339
Alignment:
Q  397 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaaca 490  Q
    |||||||||| ||||||||| ||||||||||||||| | ||||| |||| ||||  ||| ||||| || |||||||||||||||||| ||||||    
T  24418246 taagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataagatataagcttgtgtaaaaatgacaattagcaaaca 24418339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 397 - 491
Target Start/End: Complemental strand, 52831524 - 52831430
Alignment:
Q  397 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaa 491  Q
    |||||||||| ||||||||| |||||||||||||||  |||||| |||||||||  ||| || || ||||||||||||||||  ||| |||||||    
T  52831524 taagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgtaaaaatgaccgttaccaaacaa 52831430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 567 - 667
Target Start/End: Complemental strand, 55635132 - 55635034
Alignment:
Q  567 tgacaaacattggtactgctctccatgatcaattaccaccctagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagcttcaaactaa 666  Q
    ||||||||||||||| || || || ||||||||||||||| || |||||| ||||||||| | | |||||||||  |||||| |||||||||||||||||    
T  55635132 tgacaaacattggtattg-tc-ccgtgatcaattaccaccttaatgttctcagaagttccggatgctatgtttgtgagtgcccaagcagcttcaaactaa 55635035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 2733406 - 2733488
Alignment:
Q  409 tacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaa 492  Q
    |||||||| ||||||||||||||||| | ||| ||||| |||  ||||||||| || |||||||||||||||||| ||||||||    
T  2733406 tacttgaattagcttatcaaaaactgat-taagctcattaaaataagttataagctggtgtaaaaatgacaattaccaaacaaa 2733488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 491
Target Start/End: Original strand, 17425650 - 17425779
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 461  Q
    |||||| |||||||||||||||| | ||||||| ||||||||||  ||||||||  |||||||| || ||| | ||||| |||| ||||  | | |||||    
T  17425650 taaaattgagataaaaagtgataggttataagctttaagctataggctacttgagttagcttattaataaccgctataagctcaagaaaatacgctataa 17425749  T
Q  462 actcgtgtaaaaatgacaattatcaaacaa 491  Q
     ||||||| |||||| || ||| |||||||    
T  17425750 gctcgtgttaaaatggcagttaccaaacaa 17425779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 656
Target Start/End: Complemental strand, 51315786 - 51315717
Alignment:
Q  587 ctccatgatcaattaccaccctagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc 656  Q
    ||||||||||||||| || | ||||||||| ||||||||||||| ||||||||| ||||||  |||||||    
T  51315786 ctccatgatcaattagcaacttagtgttctcagaagttccagctgctatgtttgtaagtgcgaaagcagc 51315717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 17425588 - 17425640
Alignment:
Q  287 ttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||||||||||    
T  17425588 ttgtagtgtttggtaaaattagtggttgaagtaacttataaatatgaaatgac 17425640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 31736149 - 31736213
Alignment:
Q  397 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 461  Q
    |||||||||||||||||||| |||||||| |||||  ||||||| |||||||||  |||||||||    
T  31736149 taagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagttataa 31736213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 52327495 - 52327445
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaa 334  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||||||||||    
T  52327495 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 39276577 - 39276512
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||||||||| |||||||||||| ||||||| |||||| ||||| | ||||||| ||||    
T  39276577 gattgaatttgtagtgtttggtaaaattagtggttgaactagcttataaatcttaaatgacataaa 39276512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 50570375 - 50570432
Alignment:
Q  408 ctacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactc 465  Q
    ||||||||| |||||||||||||| ||||||||||| || |||  |||||||||||||    
T  50570375 ctacttgaagtagcttatcaaaaaatgttataatctaataaaaataagttataaactc 50570432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 52831651 - 52831573
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 364  Q
    ||||||||| ||  |||||||| |||| |||||||||||| ||||||||||||| | ||||  ||||||| ||||||||||    
T  52831651 aatttgtagagttcggtaaaatcagcgattgaagtagcttataaatatgaaatggcataaa--aaatgtgcatttaattaa 52831573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 41173979 - 41173919
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||| ||| ||||||||||| || ||||| |||||| |||||||||||||||    
T  41173979 gattgaatttgtattgtttggtaaaattatcgattgaactagcttgtaaatatgaaatgac 41173919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 44555585 - 44555641
Alignment:
Q  288 tgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||| ||||||||||||||||| || || ||| ||||||||||||||| ||||    
T  44555585 tgtagtgtttggtaaaattagcggttaaactaccttataaatatgaaatgacataaa 44555641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 21501831 - 21501772
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatga 338  Q
    ||||||||| ||||||| ||||| ||||||||||| || |||||| ||| ||||||||||    
T  21501831 gattaaattcgtagtgtttggtagaattagcggttaaactagcttataagtatgaaatga 21501772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 489
Target Start/End: Complemental strand, 39276423 - 39276332
Alignment:
Q  398 aagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaac 489  Q
    ||||| ||| ||||||||| ||||||||||||||  ||||||| ||  | |||  ||||||||| ||||||  ||||||||| |||||||||    
T  39276423 aagctttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagttatcaaac 39276332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 3535360 - 3535298
Alignment:
Q  282 taaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||||| ||||||| ||| | |||||| || ||| ||||||||||||||| ||||    
T  3535360 taaatttgtagtgtttggtaaatttaccagttgaattaacttataaatatgaaatgacataaa 3535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 20530490 - 20530543
Alignment:
Q  291 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||| ||||||||||||||||||||||  ||  ||||||| ||||||||||||    
T  20530490 agtgtttggtaaaattagcggttgaagtgactaataaatataaaatgacctaaa 20530543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 34812677 - 34812742
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||| ||||| | |||||||| | ||||||| |||||| ||||||||||||||| ||||    
T  34812677 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 34812742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 50192334 - 50192387
Alignment:
Q  587 ctccatgatcaattaccaccctagtgttcttagaagttccagctactatgtttg 640  Q
    |||| |||||||| |||||| ||||||||| ||||||||||| | |||||||||    
T  50192334 ctccgtgatcaatcaccaccttagtgttctcagaagttccagatgctatgtttg 50192387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 637
Target Start/End: Original strand, 3672106 - 3672154
Alignment:
Q  589 ccatgatcaattaccaccctagtgttcttagaagttccagctactatgt 637  Q
    |||||||||||||| ||| ||||||||| |||||||||| || ||||||    
T  3672106 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 3672154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 24418116 - 24418175
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||| ||||||| ||||  ||| ||||||||| ||||||||||||||| ||||    
T  24418116 aatttgtagtgtttggtaaa-ttagttgttcaagtagcttataaatatgaaatgacataaa 24418175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 30802486 - 30802427
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||| ||||||||||| || ||||| || ||| ||||||||||||||| ||||    
T  30802486 aatttgtagtgtttggtaaaatta-cgattgaattaacttataaatatgaaatgacataaa 30802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 627
Target Start/End: Original strand, 55659564 - 55659665
Alignment:
Q  524 tatacctgctcccgaacatcatcatgaggtgaaccgagtagattgacaaacattggtactgctctccatgatcaattaccaccctagtgttcttagaagt 623  Q
    ||||||||||| |||||||||||   ||||||||  ||||| |||||||  |||||||| |  | || |||||||| |||||| ||||||||  ||||||    
T  55659564 tatacctgctctcgaacatcatcgctaggtgaactaagtagcttgacaagtattggtacag--ccccgtgatcaatgaccaccttagtgttcacagaagt 55659661  T
Q  624 tcca 627  Q
    ||||    
T  55659662 tcca 55659665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 55723237 - 55723309
Alignment:
Q  403 ataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaat 475  Q
    |||||||||||||| |||||||||| | || | ||||||||||| |||| ||| | ||| |||||| ||||||    
T  55723237 ataaactacttgaattagcttatcacataccgctataatctcataaaattaagctttaagctcgtgaaaaaat 55723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 229 - 344
Target Start/End: Complemental strand, 35058802 - 35058684
Alignment:
Q  229 ggatagctgataagctaacgtataacagatgacttataagctagcttatag---attaaatttgtagtgtatggtaaaattagcggttgaagtagcttct 325  Q
    ||||||||||||| | | | |||| |||||||||||||||||| |||| ||   |||||||||||||||| |||||||||||||||||||| || ||| |    
T  35058802 ggatagctgataaaccagcttatagcagatgacttataagctaacttaaagctgattaaatttgtagtgtttggtaaaattagcggttgaactaccttat 35058703  T
Q  326 aaatatgaaatgacctaaa 344  Q
    |||||||||||||| ||||    
T  35058702 aaatatgaaatgacataaa 35058684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 42747835 - 42747780
Alignment:
Q  224 atagcggatagctgataagctaacgtataacagatgacttataagctagcttatag 279  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  42747835 atagcggatagctgataagctaacttatagctgatgacttataagctagtttatag 42747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 20791937 - 20792007
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaac 432  Q
    ||||||||| ||||||||||| | | ||||||  ||||||||||| ||||||||| |||||||||||||||    
T  20791937 taaaatggaaataaaaagtgacaagttataagatttaagctataagctacttgaattagcttatcaaaaac 20792007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 1714041 - 1714106
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||||||||| ||||||||||| | |||||||||| || ||||||||||||||| ||||    
T  1714041 gattgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaa 1714106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 523
Target Start/End: Original strand, 21516625 - 21516791
Alignment:
Q  362 taaaatggagataaaaagtgatat-gctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttata 460  Q
    |||||| ||||||| |||||| |  ||||||| | |||||||||||  |||||||  | |||||  |||||  | ||||| ||||| |||| ||||||||    
T  21516625 taaaattgagataagaagtgacaaagctataaactttaagctataagatacttgattttgcttaataaaaaacgctataagctcatcaaattaagttata 21516724  T
Q  461 aactcgtgtaaaaatgacaattatcaaacaaatcttttatagtcaca----cttataagctataagc 523  Q
    | |||||| |||||||||||||| ||||||  |||||| |||||| |    ||||||||||||||||    
T  21516725 agctcgtgaaaaaatgacaattaccaaacatgtcttttttagtcatacgagcttataagctataagc 21516791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 42747711 - 42747642
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaa 431  Q
    |||||| |||||||||||||||| ||||||||| ||||| |||||  |||||||| |||||||| |||||    
T  42747711 taaaattgagataaaaagtgataagctataagctttaagttataagttacttgaattagcttataaaaaa 42747642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 10518320 - 10518256
Alignment:
Q  376 aaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataa 440  Q
    ||||||||| | ||||||| ||||||||||| |||||| || |||||||||||||| ||||||||    
T  10518320 aaagtgataagttataagctttaagctataagctacttaaattagcttatcaaaaaatgttataa 10518256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 21516511 - 21516571
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| ||||||| |||| |||||||||||| ||||||| |||||| |||||||||||||||    
T  21516511 gattgaatttgttgtgtttggtaaaattagtggttgaaatagcttttaaatatgaaatgac 21516571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 30173406 - 30173466
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||| ||| || ||||||||||||||||||||| || ||||||||||||||| ||||    
T  30173406 aatttgtaatgtttgttaaaattagcggttgaagtagtttataaatatgaaatgacataaa 30173466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 32348470 - 32348410
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||||||| |||||||||||||||||||  |||||| ||||| |||||||||    
T  32348470 gattgaatttgtagtgtttggtaaaattagcggttgagctagcttataaatttgaaatgac 32348410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 3161053 - 3160982
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaat 350  Q
    |||| |||||||||||| ||||||||||| || ||||| |||| | ||||||||||||||| |||| |||||    
T  3161053 gattgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaatgacataaaataaat 3160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 32603004 - 32602949
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaa 334  Q
    |||| |||||||||||| | |||||||||| |||||||||||||| ||||||||||    
T  32603004 gattgaatttgtagtgtttagtaaaattagtggttgaagtagcttataaatatgaa 32602949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 3949640 - 3949705
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||||||||| |||||||||||||| ||||| ||  || ||||||||||||||| ||||    
T  3949640 gattgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgacataaa 3949705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 498
Target Start/End: Complemental strand, 32602868 - 32602767
Alignment:
Q  397 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaacaaatctt 496  Q
    |||||||||| ||| ||||| |||||||||||| ||  |||||| | |||||||  ||  ||||| ||||||||||| ||| | ||| ||||||||||||    
T  32602868 taagctataagctatttgaattagcttatcaaatacctttataaacacatgaaaataaactataagctcgtgtaaaactgatagttagcaaacaaatctt 32602769  T
Q  497 tt 498  Q
    ||    
T  32602768 tt 32602767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 23908830 - 23908890
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||| ||| |||| ||||||| ||||||| |||||| ||||||||||||||| ||||    
T  23908830 aatttgtaatgtttggtgaaattagtggttgaactagcttataaatatgaaatgacataaa 23908890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 31117601 - 31117661
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||||||| || ||||||||||| ||||| |||| | |||||||||||||||    
T  31117601 gattgaatttgtagtgtttgataaaattagcgattgaaatagcatataaatatgaaatgac 31117661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 20791823 - 20791874
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaa 335  Q
    |||||||||||| |||||||||| ||| |||||||||||| ||||| |||||    
T  20791823 aatttgtagtgtttggtaaaattggcgattgaagtagcttataaatgtgaaa 20791874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 31795359 - 31795410
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaa 335  Q
    |||||||||||| |||||||| || |||||||| |||||| |||||||||||    
T  31795359 aatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaa 31795410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 46315642 - 46315693
Alignment:
Q  399 agctataaactacttgaactagcttatcaaaaactgttataatctcatgaaa 450  Q
    |||||||| ||||||||| ||||||||||||||  ||||||| |||||||||    
T  46315642 agctataagctacttgaaatagcttatcaaaaaacgttataagctcatgaaa 46315693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 32359239 - 32359169
Alignment:
Q  409 tacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgaca 479  Q
    |||||||| ||||||||||||||  | | ||| |||||||||  ||| ||||| |||||||||||||||||    
T  32359239 tacttgaattagcttatcaaaaatcgctgtaagctcatgaaaataagctataagctcgtgtaaaaatgaca 32359169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 9496816 - 9496771
Alignment:
Q  453 aagttataaactcgtgtaaaaatgacaattatcaaacaaatctttt 498  Q
    ||||||||| |||||| |||||||||||||| |||||| |||||||    
T  9496816 aagttataagctcgtgaaaaaatgacaattaccaaacatatctttt 9496771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 490
Target Start/End: Original strand, 31117739 - 31117831
Alignment:
Q  400 gctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttata--aactcgtgtaaaaatgacaattatcaaaca 490  Q
    ||||||| ||||||||| || |||||||||||  | ||||| ||||| |||| ||||||||  |||| |||  ||||||||||||| ||||||    
T  31117739 gctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagttatattaacttgtgagaaaatgacaattaccaaaca 31117831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 32359383 - 32359334
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaa 328  Q
    |||| |||||||| ||| |||||||||||||| |||||||||||| ||||    
T  32359383 gattgaatttgtaatgtttggtaaaattagcgtttgaagtagcttataaa 32359334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 37131512 - 37131565
Alignment:
Q  397 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaa 450  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||  ||||||||    
T  37131512 taagctataagctacttgaattagcttatcaaaagctgttgtaagttcatgaaa 37131565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 35926534 - 35926582
Alignment:
Q  291 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    ||||| |||||||||||| ||||||| |||||| ||| |||||||||||    
T  35926534 agtgtttggtaaaattagtggttgaactagcttataagtatgaaatgac 35926582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 524
Target Start/End: Complemental strand, 43822625 - 43822474
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 461  Q
    ||||||||||||||||||||| | ||||||||| ||||||||       |||||| |||||||||||||||   |||||||||||||||  ||| |||||    
T  43822625 taaaatggagataaaaagtgacaagctataagctttaagcta-------cttgaattagcttatcaaaaaccactataatctcatgaaaataagctataa 43822533  T
Q  462 actcgtgtaaaaatgacaattatcaaacaaatcttttatagtcacacttataagctataagct 524  Q
     || |||||||||||||||||| |||||  ||||||| || |||    |||||||||||||||    
T  43822532 gcttgtgtaaaaatgacaattaccaaacggatcttttttaatca----tataagctataagct 43822474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 32582658 - 32582594
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||||||||| ||||||||||||| | ||||||||||| ||| ||||||||||| ||||    
T  32582658 gattgaatttgtagtgtttggtaaaattagccg-tgaagtagcttataagtatgaaatgacataaa 32582594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 38684749 - 38684806
Alignment:
Q  374 aaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaa 431  Q
    ||||| ||||| | ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  38684749 aaaaaatgataagttataagctttaagctataagctacttgaattagcttatcaaaaa 38684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 20873072 - 20873132
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||| |||||| ||||||||| ||||||||||||| ||| || |||||||||||| ||||    
T  20873072 aatttttagtgtttggtaaaatcagcggttgaagtaacttatacatatgaaatgacataaa 20873132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 489
Target Start/End: Complemental strand, 37334563 - 37334472
Alignment:
Q  398 aagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaac 489  Q
    ||||||||| |||| |||  |||||||| | ||||  |||||| |||||||||    | ||||||||||||||||||||||| |||||||||    
T  37334563 aagctataagctacgtgagttagcttataataaaccattataagctcatgaaaatctgctataaactcgtgtaaaaatgacagttatcaaac 37334472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 30915 - 30837
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaactgttataa 440  Q
    |||||| |||||||| | |||||  |||||| | ||||  ||||||||||||||| ||  |||||||||||||||||||    
T  30915 taaaattgagataaataatgataaactataaactttaatttataaactacttgaattaatttatcaaaaactgttataa 30837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 1384275 - 1384229
Alignment:
Q  369 gagataaaaagtgatatgctataagcgttaagctataaactacttga 415  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  1384275 gagataaaaagtgataagttataagctttaagctataagctacttga 1384229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 3729926 - 3729869
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 336  Q
    |||| |||||||||||| |||||  ||||||||||||| | |||| ||||||||||||    
T  3729926 gattgaatttgtagtgtttggtatgattagcggttgaactggcttataaatatgaaat 3729869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 9198050 - 9198115
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| ||| |||||||| ||||||||||||  |||||| ||| || ||||||||||||||| ||||    
T  9198050 gattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacataaa 9198115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 166803 - 166743
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  166803 gattgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgac 166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 84828 - 84915
Alignment:
Q  254 cagatgacttataagctagcttatagattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaat 345  Q
    |||||||||||||||||||||||| ||||    ||||||| | || |||||||||| ||||||||||||| || |||||||||||| |||||    
T  84828 cagatgacttataagctagcttattgatt----ttgtagtatttgttaaaattagcagttgaagtagcttatagatatgaaatgacataaat 84915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 2111079 - 2111014
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  2111079 gattgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacataaa 2111014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 8407639 - 8407586
Alignment:
Q  291 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  8407639 agtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacataaa 8407586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 35764789 - 35764724
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||| ||||| |||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  35764789 gattgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaatgacataaa 35764724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 43408738 - 43408678
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||||||| ||||||||||||   ||||| |||||| |||||||||||||||    
T  43408738 gattgaatttgtagtgtttggtaaaattagtaattgaactagcttataaatatgaaatgac 43408678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 3346113 - 3346184
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaat 350  Q
    |||| |||||||| |||||| |||||||| |||||| | || ||| |||||||||||||| ||||| |||||    
T  3346113 gattgaatttgtaatgtatgataaaattaacggttggaataacttataaatatgaaatgatctaaaataaat 3346184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 5111518 - 5111572
Alignment:
Q  285 atttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    ||||||||||| ||||||||| |||| ||||| |||||| | |||||||||||||    
T  5111518 atttgtagtgtttggtaaaataagcgcttgaactagcttattaatatgaaatgac 5111572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 6078472 - 6078556
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 364  Q
    |||| |||||||||| | || |||||||| |||| |||||| ||| ||||||||||| ||| |||| | ||| |||||||||||||    
T  6078472 gattgaatttgtagtttttgataaaattaacggtggaagtaacttataaatatgaaaagacataaaat-aatatgtatttaattaa 6078556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 6082404 - 6082488
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 364  Q
    |||| |||||||||| | || |||||||| |||| |||||| ||| ||||||||||| ||| |||| | ||| |||||||||||||    
T  6082404 gattgaatttgtagtttttgataaaattaacggtggaagtaacttataaatatgaaaagacataaaat-aatatgtatttaattaa 6082488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 12524607 - 12524656
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaa 328  Q
    |||| |||||||||||| ||||||||||||| ||||||||| ||| ||||    
T  12524607 gattgaatttgtagtgtttggtaaaattagccgttgaagtaacttataaa 12524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 28947321 - 28947386
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||| ||||| | |||||||| | ||||||| |||||| ||||||||||||||| ||||    
T  28947321 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 28947386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 926046 - 925986
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| ||||||| |||| ||||||||| || |||||||  ||||| |||||||||||||||    
T  926046 gattgaatttgttgtgtttggtaaaatgagtggttgaaccagcttataaatatgaaatgac 925986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 9889394 - 9889346
Alignment:
Q  589 ccatgatcaattaccaccctagtgttcttagaagttccagctactatgt 637  Q
    |||||||||||||| ||| ||||||||| |||||||||| || ||||||    
T  9889394 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 9889346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 21367097 - 21367133
Alignment:
Q  285 atttgtagtgtatggtaaaattagcggttgaagtagc 321  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  21367097 atttgtagtgtttggtaaaattagcgattgaagtagc 21367133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 25019505 - 25019565
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| ||||||| ||||||||||||||||| ||||  ||| ||| ||||||||||| ||||    
T  25019505 aattcgtagtgtttggtaaaattagcggttaaagtcacttgtaattatgaaatgacataaa 25019565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 25099576 - 25099628
Alignment:
Q  292 gtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| ||||||||||||| ||||||||||||  ||||||| ||||||| ||||    
T  25099576 gtgtttggtaaaattagctgttgaagtagctgataaatataaaatgacataaa 25099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 37740812 - 37740756
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaa 335  Q
    |||| |||||||||||| || || ||||||| |||||| |||||| |||||||||||    
T  37740812 gattgaatttgtagtgtttgatacaattagctgttgaactagcttttaaatatgaaa 37740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 665
Target Start/End: Complemental strand, 13401356 - 13401218
Alignment:
Q  525 atacctgctcccgaacatcatcatgaggtgaaccgagtagattgacaaacattggtactgctctccatgatcaattaccaccctagtgttcttagaagtt 624  Q
    |||||||||||||||||||||||   || ||||  ||||| || ||||| || || ||||| |  ||||||||||||||||| |||| |||| |||||||    
T  13401356 atacctgctcccgaacatcatcacttggagaactaagtagcttcacaaatatcggcactgccc--catgatcaattaccaccttagtattctcagaagtt 13401259  T
Q  625 ccagctactatgtttgaaagtgccgaagcagcttcaaacta 665  Q
    || | | ||||||||| ||| ||| ||||||| ||||||||    
T  13401258 ccggatgctatgtttgtaagagcccaagcagcctcaaacta 13401218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 15968023 - 15967968
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||||||||||  |||||||||||||||||||| |||||| |||||||||||||||    
T  15968023 aatttgtagtgcttggtaaaattagcggttgaactagcttataaatatgaaatgac 15967968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 27679289 - 27679230
Alignment:
Q  285 atttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  27679289 atttatagtgtctggtaaaattagcggttgaactagcttataaatatgaaatgacataaa 27679230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 474
Target Start/End: Complemental strand, 31063014 - 31062936
Alignment:
Q  396 ttaagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaa 474  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||||| ||| |||||  ||||||||| ||||| ||||||    
T  31063014 ttaagctataagctacttgaaatagcttatcaaaaaccgctataagctcttgaaaataagttataagctcgtataaaaa 31062936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 42139584 - 42139530
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatga 338  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||    
T  42139584 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaaatga 42139530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 21722071 - 21722011
Alignment:
Q  219 aataaatagcggatagctgataagctaacgtataacagatgacttataagctagcttatag 279  Q
    ||||||||||||||||||||||||||| | |||  | |||||||||||||||| |||||||    
T  21722071 aataaatagcggatagctgataagctagcttattgcggatgacttataagctaacttatag 21722011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 40909978 - 40909918
Alignment:
Q  401 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 461  Q
    |||||||||||||||| ||||||||||||||  ||||||| |||||||||  |||||||||    
T  40909978 ctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttataa 40909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 31063164 - 31063103
Alignment:
Q  278 agattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    ||||| |||||||||||| || ||| ||||||||||||||||  || |||||||||||||||    
T  31063164 agattgaatttgtagtgtttgataagattagcggttgaagtaatttataaatatgaaatgac 31063103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 21721979 - 21721919
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||||||| || ||||||||||||| |||||| |||||| ||||||| ||||||| ||||    
T  21721979 aatttgtagagtttggtaaaattagcagttgaaatagcttataaatataaaatgacataaa 21721919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 27863934 - 27863874
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||||||| || |||||||| ||||||| ||||||| ||||| |||||||||    
T  27863934 gattgaatttgtagtgtttgataaaattaccggttgaggtagcttataaatgtgaaatgac 27863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 44984222 - 44984285
Alignment:
Q  300 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 364  Q
    |||||||||||||| ||||| ||| ||||||||||||||| ||||  ||||||| ||||||||||    
T  44984222 taaaattagcggttaaagtaccttataaatatgaaatgacataaa-aaaatgtgcatttaattaa 44984285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 30804384 - 30804439
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||||||||||| | |||||||||||||||||| ||| || ||| |||||||||||    
T  30804384 aatttgtagtgtttcgtaaaattagcggttgaactagattataagtatgaaatgac 30804439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 40809098 - 40809063
Alignment:
Q  206 tttggcaaaaataaataaatagcggatagctgataa 241  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40809098 tttggcaaaaataaataaataacggatagctgataa 40809063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 40910097 - 40910036
Alignment:
Q  300 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatt 362  Q
    |||||||||||||| ||||| ||| ||||||||||||||| ||||  ||||||| ||||||||    
T  40910097 taaaattagcggttaaagtaccttataaatatgaaatgacataaa-aaaatgtgcatttaatt 40910036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 43613382 - 43613332
Alignment:
Q  218 aaataaatagcggatagctgataagctaacgtataacagatgacttataag 268  Q
    ||||||||||  ||||  |||||||||||| ||||||||||||||||||||    
T  43613382 aaataaataggagatacttgataagctaacttataacagatgacttataag 43613332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 21938182 - 21938125
Alignment:
Q  222 aaatagcggatagctgataagctaacgtataacagatgacttataagctagcttatag 279  Q
    ||||||||||||  | |||||||||  |||||||||||||||||||| ||| ||||||    
T  21938182 aaatagcggatattttataagctaatttataacagatgacttataagttagtttatag 21938125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 28249824 - 28249889
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||||||||||||||| | |||||||||  ||||||  || ||| ||||||||||||||| ||||    
T  28249824 gattaaatttgtagtgtgtagtaaaattaatggttgatctaacttataaatatgaaatgacataaa 28249889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 38356826 - 38356785
Alignment:
Q  457 tataaactcgtgtaaaaatgacaattatcaaacaaatctttt 498  Q
    |||||||| |||| |||| |||||||||||||||||||||||    
T  38356826 tataaacttgtgtgaaaaagacaattatcaaacaaatctttt 38356785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 44984345 - 44984405
Alignment:
Q  401 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataa 461  Q
    |||||| ||||||||| ||||||||||||||  ||||||| ||| |||||  |||||||||    
T  44984345 ctataagctacttgaattagcttatcaaaaaacgttataagctcgtgaaaataagttataa 44984405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 401 - 488
Target Start/End: Complemental strand, 883806 - 883719
Alignment:
Q  401 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaa 488  Q
    |||||||||||||||| || ||||||| |||||  ||||  |||||||||  ||||||||| |||||||||||||| || ||||||||    
T  883806 ctataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaatgtcagttatcaaa 883719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 401 - 488
Target Start/End: Complemental strand, 1243135 - 1243048
Alignment:
Q  401 ctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgacaattatcaaa 488  Q
    |||||||||||||||| || ||||||| |||||  ||||  |||||||||  ||||||||| |||||||||||||| || ||||||||    
T  1243135 ctataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaatgtcagttatcaaa 1243048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 3837143 - 3837088
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||    
T  3837143 aatttgtagtgtttggtaaaattagccgttgaagtagcttataaatatgtaatgac 3837088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 28175451 - 28175528
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatt 362  Q
    |||||||||||| || || |||||||||||||||||||||  |||||||||||||| ||||  |||||| |||||||||    
T  28175451 aatttgtagtgtttgatataattagcggttgaagtagcttacaaatatgaaatgacataaa-aaaatgtatatttaatt 28175528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 883925 - 883864
Alignment:
Q  300 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatta 363  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  883925 taaaattaacggttgaagtagcttataaatatgaaatgacataaa--aaatgtgcatttaatta 883864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 1243254 - 1243193
Alignment:
Q  300 taaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaatta 363  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  1243254 taaaattaacggttgaagtagcttataaatatgaaatgacataaa--aaatgtgcatttaatta 1243193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 87160 - 87218
Alignment:
Q  286 tttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||| | |||||||||||||||||| ||| || ||||||||||||||| ||||    
T  87160 tttgtagtgttttgtaaaattagcggttgaattagattgtaaatatgaaatgacataaa 87218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 44235370 - 44235415
Alignment:
Q  299 gtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||    
T  44235370 gtaaaattagcggttgaagtagtttataaatatgaaatgacataaa 44235415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 13438325 - 13438389
Alignment:
Q  280 attaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||||||| |||| |||||||||||| || || ||| ||||||| ||||||| ||||    
T  13438325 attaaatttgtagtgtttggttaaattagcggttaaactaacttataaatataaaatgacataaa 13438389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 19683451 - 19683511
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| |||||||||||| || ||||| |||||||||||||| ||  |||||||||||||||    
T  19683451 gattgaatttgtagtgtttgataaaaatagcggttgaagtaactaataaatatgaaatgac 19683511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 12473109 - 12473163
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaa 416  Q
    |||||| |||||||||| ||||| |||| |||| ||||||||||| |||||||||    
T  12473109 taaaattgagataaaaaatgataagctacaagctttaagctataagctacttgaa 12473163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 2525353 - 2525296
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 336  Q
    |||| |||||||| ||| ||||||||||||| | |||| |||||| ||||||||||||    
T  2525353 gattgaatttgtattgtttggtaaaattagcagctgaactagcttataaatatgaaat 2525296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 44235317 - 44235370
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatg 332  Q
    |||| |||||||||||| ||||||| ||| | ||||||||||||| ||||||||    
T  44235317 gatttaatttgtagtgtttggtaaagttaaccgttgaagtagcttataaatatg 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 44571499 - 44571446
Alignment:
Q  291 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||| ||||||||||||| ||||||||||||  ||||||| ||||||| ||||    
T  44571499 agtgtttggtaaaattagctgttgaagtagctgataaatataaaatgacgtaaa 44571446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 28543533 - 28543614
Alignment:
Q  281 ttaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 364  Q
    |||||||| || ||| |||||||||||| | ||||| ||| || |||||||||||| || ||||  |||| |||||||||||||    
T  28543533 ttaaatttatattgtttggtaaaattagtgattgaaatagtttataaatatgaaataacttaaa--aaatatgtatttaattaa 28543614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 1621438 - 1621484
Alignment:
Q  298 ggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  1621438 ggtaaaattagcggttgaagtagcttataaatatgaaatgacataaa 1621484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 6462367 - 6462437
Alignment:
Q  362 taaaatggagataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaac 432  Q
    |||||| |||||||| | ||||| ||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  6462367 taaaattgagataaataatgataagctataagctttaagatataagctacttgaattagcttatcaaaaac 6462437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 9004888 - 9004814
Alignment:
Q  399 agctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaa 473  Q
    |||||||| ||||||||| ||||||||||||||| | ||||| |||||||||  ||| ||||| |||||||||||    
T  9004888 agctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataagctcgtgtaaaa 9004814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 32046975 - 32046916
Alignment:
Q  278 agattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatg 337  Q
    ||||| |||||| ||||| |||||| ||||||||||||| |||||| |||||||||||||    
T  32046975 agattgaatttggagtgtttggtaatattagcggttgaactagcttttaaatatgaaatg 32046916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 13838853 - 13838914
Alignment:
Q  371 gataaaaagtgatatgctataagcgttaagctataaactacttgaactagcttatcaaaaac 432  Q
    |||||||| ||||| ||||||||  ||||||||||| ||||||||| ||||| |||||||||    
T  13838853 gataaaaaatgataagctataagttttaagctataagctacttgaattagctaatcaaaaac 13838914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 17902852 - 17902799
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatg 332  Q
    ||||||||||||||||| |||||||| |||| |||||| |||||| ||||||||    
T  17902852 gattaaatttgtagtgtttggtaaaactagcagttgaactagcttataaatatg 17902799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 28363604 - 28363538
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaat 345  Q
    |||| |||||||||||| |||||| |||||| |||||| ||| || ||| ||||||||||| |||||    
T  28363604 gattgaatttgtagtgtttggtaatattagctgttgaactagtttataagtatgaaatgacataaat 28363538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 17259651 - 17259606
Alignment:
Q  299 gtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||||||||| |||||| ||| ||||||||||| ||||    
T  17259651 gtaaaattagcggttgaactagcttataagtatgaaatgacataaa 17259606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 41892772 - 41892829
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 336  Q
    |||| |||||||||||| ||||| ||||| ||||| || |||||| ||||||||||||    
T  41892772 gattgaatttgtagtgtttggtataattaacggttaaactagcttataaatatgaaat 41892829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 2942128 - 2942068
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    ||||||||| || |||||||||||| ||||||| || ||| ||||||| ||||||| ||||    
T  2942128 aatttgtagggtttggtaaaattagtggttgaactaacttataaatataaaatgacataaa 2942068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 5390490 - 5390446
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaa 328  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||    
T  5390490 aatttgtagtgtttggttaaatgagcggttgaactagcttctaaa 5390446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 31677346 - 31677298
Alignment:
Q  291 agtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    ||||| |||||||| ||||||||||| ||||||  ||||||||||||||    
T  31677346 agtgtttggtaaaactagcggttgaactagcttacaaatatgaaatgac 31677298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 34640238 - 34640178
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||| ||| |||||||||||| ||||   ||||||| ||||||||||||||| ||||    
T  34640238 aatttgtaatgtttggtaaaattagtggttattgtagcttataaatatgaaatgacataaa 34640178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 724763 - 724711
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaat 336  Q
    |||||||||||| || ||||||||| |||||||||||||| ||||||| ||||    
T  724763 aatttgtagtgtttgataaaattagtggttgaagtagcttataaatataaaat 724711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 34544483 - 34544423
Alignment:
Q  284 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||||| || || |||||| ||||||| |||||| ||||||||||||||| ||||    
T  34544483 aatttgtagtgtttgatacaattagtggttgaactagcttataaatatgaaatgacataaa 34544423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 9749812 - 9749867
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaa 334  Q
    |||| |||||||||||| |||||||||||| |||||||||||  | ||||||||||    
T  9749812 gatttaatttgtagtgtttggtaaaattagtggttgaagtagtgtataaatatgaa 9749867  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 1288495 - 1288437
Alignment:
Q  286 tttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||||||||| || |||||||| |||||||| || ||| ||||||||||||||| ||||    
T  1288495 tttgtagtgtttgataaaattaacggttgaaataacttataaatatgaaatgacataaa 1288437  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 13692577 - 13692501
Alignment:
Q  287 ttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaattaaatgtgtatttaattaa 364  Q
    ||||||| | || ||||||||| ||||||||||| |  ||||||||||||||| ||||  |||||| |||||||||||    
T  13692577 ttgtagtatttgataaaattagtggttgaagtagttaataaatatgaaatgacataaa-gaaatgtatatttaattaa 13692501  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 29052761 - 29052696
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 344  Q
    |||| |||||| ||||| ||||||||| ||||||| |  |||||| ||||||||||||||| ||||    
T  29052761 gattgaatttgcagtgtttggtaaaataagcggttcacctagcttataaatatgaaatgacataaa 29052696  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 8014427 - 8014487
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 339  Q
    |||| ||||| |||||| ||||||||||||| || ||| |||||| |||| ||||||||||    
T  8014427 gattgaatttatagtgtttggtaaaattagcagtcgaactagcttataaacatgaaatgac 8014487  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 338918 - 338977
Alignment:
Q  279 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatga 338  Q
    |||| |||||||||||| || || | ||||||||||||||||||| ||||||| ||||||    
T  338918 gattgaatttgtagtgtttgatatagttagcggttgaagtagcttataaatataaaatga 338977  T

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