View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589-Insertion-5 (Length: 460)
Name: NF5589-Insertion-5
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589-Insertion-5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 151 - 460
Target Start/End: Complemental strand, 32644795 - 32644489
Alignment:
| Q |
151 |
accgtaaaatttattaataatcaagtcccttcacacagaacgaatagggcacattttacatatattttatgtaatttatgttttcaattcattgcagtat |
250 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32644795 |
accgtaaaatttattaataatcg-gtccctgtacata--acgaatagggcacattttacatatattttatgtaatttatgttttcaattcattgcagtat |
32644699 |
T |
|
| Q |
251 |
tattggagctgttatcattgcactaggcctttatacagttgtgtggggaaaagccaaagactattctaaatcagacaccaaattaccatcatcaaccatt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32644698 |
gattggagctgttatcattgcactaggcctttatacagttgtgtggggaaaagccaaagactattcagaatcagacaccaaattaccatcatcaaccatt |
32644599 |
T |
|
| Q |
351 |
gaaggggagacaaaatcaatgccaattactgcaatagatgatcccaaaattgatattattgctgtaaatttggaaaaccaaccaccatcaaaggataaat |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32644598 |
gaaggggagacaaaatcaatgccaattactgcaatagatgatcccaaaattgatattattgctgttaatttggaaaaccaaccaccatcaaaggataaat |
32644499 |
T |
|
| Q |
451 |
tagaggagcc |
460 |
Q |
| |
|
|||||||||| |
|
|
| T |
32644498 |
tagaggagcc |
32644489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 32644904 - 32644844
Alignment:
| Q |
8 |
catcgttgcttgtctgggctccttttttttaggagaaaatctttaccttggaaggtaaact |
68 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32644904 |
catcgttgcttgtttgggctccttttttttaggagaaaatctttaccttggaaggtaaact |
32644844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 29861872 - 29861839
Alignment:
| Q |
87 |
gaaaactcggtatccgatctaggaatcgactaat |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
29861872 |
gaaaactcggtatccgatctaagaatcgactaat |
29861839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 8442049 - 8442082
Alignment:
| Q |
87 |
gaaaactcggtatccgatctaggaatcgactaat |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
8442049 |
gaaaattcggtatccgatctaggaatcgactaat |
8442082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 8451 - 8483
Alignment:
| Q |
88 |
aaaactcggtatccgatctaggaatcgactaat |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
8451 |
aaaactcggtatccgatctaagaatcgactaat |
8483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 5360071 - 5360103
Alignment:
| Q |
88 |
aaaactcggtatccgatctaggaatcgactaat |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
5360071 |
aaaactcggtatccgatctaagaatcgactaat |
5360103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University