View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589-Insertion-6 (Length: 445)
Name: NF5589-Insertion-6
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589-Insertion-6 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (9 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 445
Target Start/End: Original strand, 10420347 - 10420785
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10420347 |
actttaccaggaggaacatatcctatacttcccttgattgtggaagaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
10420446 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10420447 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgctcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
10420546 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttct |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
10420547 |
ataattaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgaggctgagattatgaattccagacccttctttatcgtgcagaagcttttct |
10420646 |
T |
|
| Q |
307 |
agactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagt |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10420647 |
agactccccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcggt |
10420746 |
T |
|
| Q |
407 |
gtttcatctttcctagagcttcgcattctgctttgaaac |
445 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10420747 |
gtttcatctttcctagagcttcgcgttctgctttgaaac |
10420785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 10415461 - 10415887
Alignment:
| Q |
8 |
ctttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaa |
107 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| || || || | || | |||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
10415461 |
ctttaccagtaggaatatatcctatagttcctttaatagtagaggaaatgacttgatctttacttgaatgctctgtggctccaagaatgagcctagctaa |
10415560 |
T |
|
| Q |
108 |
gccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaaga |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||||||||||| | | ||||| |||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
10415561 |
gccaaagtctcccaagtgggctacaacgtcatcgtcaagaagaacgttgcttgacttaacatcacagtgaactacggcttgctctgtatcattgtgaaga |
10415660 |
T |
|
| Q |
208 |
taatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttcta |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| | ||||||| || | ||||||||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
10415661 |
taatcaagtgcatgagctagatcaagagcgatgtctaacctttgtgccaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttcca |
10415760 |
T |
|
| Q |
308 |
gactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagtg |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || | ||| |
|
|
| T |
10415761 |
gactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtg |
10415860 |
T |
|
| Q |
408 |
tttcatctttcctagagcttcgcattc |
434 |
Q |
| |
|
||||||||||||| ||| | |||||| |
|
|
| T |
10415861 |
cttcatctttcctaaagcattgcattc |
10415887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 10409763 - 10410196
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||| ||| | | |||| |||| |||||||||| |
|
|
| T |
10409763 |
actttaccgggaggaacatatcctatagttcccttaattgtagaggaaataacttgatctttacttgaatgttctgtagctccacgaattagcctagcta |
10409862 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| || |||||||| ||| | || |||| ||| ||||| | ||||||||| | || ||||||| |
|
|
| T |
10409863 |
agccaaagtctcctaagtgagctacattgtcatcatcgagaagaacattgcttggtttaacgccactatgaaccaccacttgctctgcatcaatgtgaag |
10409962 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagaccc---ttcgttatt---atgcagaagc |
300 |
Q |
| |
|
|||||| | |||||||||||| | ||| ||||||| | ||||||| ||| | |||||| || ||| |||| | ||| ||||| ||||| ||| |
|
|
| T |
10409963 |
ataatccaatgcatgagctacgttgagaacaatgtctaacctttgtgtgaaattgagattcagatttctagactcgtgttctttattaccatgcaaaagg |
10410062 |
T |
|
| Q |
301 |
ttttctagactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggt |
400 |
Q |
| |
|
||||| | |||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
10410063 |
ttttccaaactcccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttaacaagat |
10410162 |
T |
|
| Q |
401 |
ttcagtgtttcatctttcctagagcttcgcattc |
434 |
Q |
| |
|
| | ||| ||||| ||||| ||||||| |||||| |
|
|
| T |
10410163 |
tccggtgcttcatgtttcccagagctttgcattc |
10410196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 445
Target Start/End: Complemental strand, 35367277 - 35366839
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35367277 |
actttaccaggaggaacatatcctatagttcccttaattgtggaagaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
35367178 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
35367177 |
agccaaagtctcccaagtgggctacagtgtcatcgtccagaagaacgttgctcggcttaatatcacagtgaactatggatttctctgtaccattgtgaag |
35367078 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttct |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || |||||||| | |||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
35367077 |
ataatcgagtgcatgagctacatcaagagcaatgtcaactctgtgtctgaggctgagattatgatttccagacccttcgttatcatgcagaagcttttct |
35366978 |
T |
|
| Q |
307 |
agactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagt |
406 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
|
|
| T |
35366977 |
agacttcccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaatgcttgaacaacaagttaggatcttgacaagatttcggt |
35366878 |
T |
|
| Q |
407 |
gtttcatctttcctagagcttcgcattctgctttgaaac |
445 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35366877 |
gcttcatctttcctagagcttcacattctgctttgaaac |
35366839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 35411089 - 35410699
Alignment:
| Q |
8 |
ctttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaa |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || ||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
35411089 |
ctttaccaggaggaatatatcctatagttcctttaattgtagaaaaaataacttgatctttacttgaatgctctgtggttccaagaatgagcctagccaa |
35410990 |
T |
|
| Q |
108 |
gccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaaga |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
35410989 |
gccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgctcggcttaagatcacagtgaactacagcttgctctgtctcattgtgaaga |
35410890 |
T |
|
| Q |
208 |
taatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttcta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||| || ||||||||||||||| ||||| || |||||||| |
|
|
| T |
35410889 |
taatcaagtgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattatgattttcagacccttcgttatcatgcaaaaacttttcta |
35410790 |
T |
|
| Q |
308 |
gactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaag |
398 |
Q |
| |
|
|| |||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
35410789 |
gattcccattaggcattaactcaaaaacaatagccttgaactcttcaccattataatcaacacttgaacaacacgttaggattttgacaag |
35410699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 437
Target Start/End: Complemental strand, 35386429 - 35385999
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || || | || |||||||||||||||||||||| ||| ||||||||||||||| |||||| | |
|
|
| T |
35386429 |
actttaccaggaggaatatatcctatagttcctttaatagtagaggaaataacttgatctttacttgaatgctctgtggttccaagaatgatcctagcca |
35386330 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |||||||||||| | ||||||| |||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
35386329 |
agccaaagtctcccaagtgggctacaaagtcatcgtcaagaagaacgttgcttggcttaagatcacagtgaactacggcttgctctgtatcattgtgaag |
35386230 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| | |||| |||||||||| || |||||||||| ||||| |||| || |||||| |
|
|
| T |
35386229 |
ataatcaagtgcatgagctacatcaagagcaatgtctaacctttatgtgaggttgagattatgattttcagacccttcattattgtgcaaaaacttttca |
35386130 |
T |
|
| Q |
307 |
agactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagt |
406 |
Q |
| |
|
|||||| | || | |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| || || |
|
|
| T |
35386129 |
agactctcatttgacatgaactcaaaaacaatagccttgaaatcttcacccttataatcaacacttgaacaacaggttaggaccttgacaagattctggt |
35386030 |
T |
|
| Q |
407 |
gtttcatctttcctagagcttcgcattctgc |
437 |
Q |
| |
|
| ||||||||||| ||||| | ||||||||| |
|
|
| T |
35386029 |
gcttcatctttcccagagcattgcattctgc |
35385999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 35755231 - 35754819
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||| | | |||| ||||||||||||||| |
|
|
| T |
35755231 |
actttaccaggaggaacatatcctatagttcccttaattgtagaggaattaacttgatctttacttgaatgttctgtagctccatgaatgagcctagcta |
35755132 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| || |||||||| ||| | |||||||||||||||||||||| | |||| |||||| |||||||||| |
|
|
| T |
35755131 |
ggccaaagtctcccaagtgggctacaatttcatcatcaagaagaacattgcttggcttaatatcacagtgaactacgacttgttctgtatcattgtgaag |
35755032 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttct |
306 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| | ||||||| |||| ||||||| | |||| |||||||| |||| |||| | |||||| |
|
|
| T |
35755031 |
ataatccaatgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattaaaatttcctgacccttcattatcgtgcaacaacttttca |
35754932 |
T |
|
| Q |
307 |
agactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagt |
406 |
Q |
| |
|
|||||||| || | |||||||| |||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||| || | || |
|
|
| T |
35754931 |
agactcccatttgacatgaactcaaaaacaatagctttgaaatcttcaccattataatcaacacttgaacaacaagttaaaatcttgacaagattccggt |
35754832 |
T |
|
| Q |
407 |
gtttcatctttcc |
419 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
35754831 |
gcttcatctttcc |
35754819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 35376829 - 35376396
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||| | || ||||||||| ||||||||||| ||| | | |||| | | || |||||||| |
|
|
| T |
35376829 |
actttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagcta |
35376730 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
||||||||||||| ||||| || ||| |||||| || |||||||| ||| | ||||||| |||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
35376729 |
agccaaagtctcctaagtgggccacaccgtcatcatcaagaagaacattgcttggcttaacatcacaatgaactacaacttgctctgtatcattgtgaag |
35376630 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagac------ccttcgttattatgcagaagc |
300 |
Q |
| |
|
|||||| | |||||||||||| || ||||||||||| | ||||||| ||| | |||||| || ||| |||| |||||||| ||||| || |
|
|
| T |
35376629 |
ataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacagg |
35376530 |
T |
|
| Q |
301 |
ttttctagactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggt |
400 |
Q |
| |
|
||||| ||| |||| |||||||||||| ||||||||| ||||| || |||||||| ||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
35376529 |
ttttccagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagat |
35376430 |
T |
|
| Q |
401 |
ttcagtgtttcatctttcctagagcttcgcattc |
434 |
Q |
| |
|
| | ||| ||||||||||||| ||| | |||||| |
|
|
| T |
35376429 |
tacggtgcttcatctttcctaaagcattgcattc |
35376396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 35424088 - 35423655
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||| | || ||||||||| ||||||||||| ||| | | |||| | | || |||||||| |
|
|
| T |
35424088 |
actttaccaggaggaatatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagcta |
35423989 |
T |
|
| Q |
107 |
agccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaag |
206 |
Q |
| |
|
|||||||||||| ||||| | ||| |||||| || |||||||| ||| | || |||| |||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
35423988 |
cgccaaagtctcctaagtgggtcacaccgtcatcatcaagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaag |
35423889 |
T |
|
| Q |
207 |
ataatcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagac------ccttcgttattatgcagaagc |
300 |
Q |
| |
|
|||||| | |||||||||||| || ||||||||||| | ||||||| ||| | |||||| || ||| |||| |||||||| ||||| || |
|
|
| T |
35423888 |
ataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacagg |
35423789 |
T |
|
| Q |
301 |
ttttctagactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggt |
400 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||| ||||| || |||||||| ||||||||||| |||||||| ||||||||||| || ||||| | |
|
|
| T |
35423788 |
ttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacagcaagttaggattttcacaagat |
35423689 |
T |
|
| Q |
401 |
ttcagtgtttcatctttcctagagcttcgcattc |
434 |
Q |
| |
|
| | ||| ||||||||||||| ||| | |||||| |
|
|
| T |
35423688 |
tacggtgcttcatctttcctaaagcattgcattc |
35423655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 35370370 - 35370249
Alignment:
| Q |
301 |
ttttctagactccccttaggcatgaactgaaaaacaatagccttg-aactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaagg |
399 |
Q |
| |
|
||||||| |||||| || |||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
35370370 |
ttttctaaactcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattataatcaacacttgagcaacacgttaggattttgacaaga |
35370271 |
T |
|
| Q |
400 |
tttcagtgtttcatctttccta |
421 |
Q |
| |
|
|| | ||| |||||||||||| |
|
|
| T |
35370270 |
ttacggtgcctcatctttccta |
35370249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 417
Target Start/End: Complemental strand, 35437134 - 35437020
Alignment:
| Q |
303 |
ttctagactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggttt |
402 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| ||||||| |||||||||| |||||||| ||||||||| ||| | ||||||| |
|
|
| T |
35437134 |
ttctagactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaacagaaagttaggagcttcagaaggttt |
35437035 |
T |
|
| Q |
403 |
cagtgtttcatcttt |
417 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35437034 |
ttgtgtttcatcttt |
35437020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 35437334 - 35437199
Alignment:
| Q |
103 |
gctaagccaaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgt |
202 |
Q |
| |
|
||||| ||||| ||||| |||| ||| | |||||||||||| |||||||| || | |||||||||||||||||||||| |||| | | | || || |
|
|
| T |
35437334 |
gctaacccaaaatctcctaagtaagcaataatgtcatcgtcgagaagaacattacttggcttaatatcacagtgaactacagcttcatgggaattatggt |
35437235 |
T |
|
| Q |
203 |
gaagataatcaagtgcatgagctacatcaagagcaa |
238 |
Q |
| |
|
|||||||||| | |||||| |||||||| ||||||| |
|
|
| T |
35437234 |
gaagataatccaatgcatgggctacatcgagagcaa |
35437199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 445
Target Start/End: Complemental strand, 30663436 - 30663001
Alignment:
| Q |
10 |
ttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||| || ||| |||| |||| | ||| || || | |
|
|
| T |
30663436 |
ttaccaggaggaacatatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaaccttgccaatc |
30663337 |
T |
|
| Q |
110 |
caaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagata |
209 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || |||||||| ||| | || || | |||||||||||||| | | ||| ||||||||||||||||| |
|
|
| T |
30663336 |
caaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagata |
30663237 |
T |
|
| Q |
210 |
atcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttctaga |
309 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
30663236 |
atccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctaga |
30663137 |
T |
|
| Q |
310 |
ctccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagtgtt |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||||| |||| ||| | |
|
|
| T |
30663136 |
ctccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttcggtgct |
30663037 |
T |
|
| Q |
410 |
tcatctttcctagagcttcgcattctgctttgaaac |
445 |
Q |
| |
|
|||||||||| | ||||| |||||| ||| |||||| |
|
|
| T |
30663036 |
tcatctttcccaaagctttgcattcagctgtgaaac |
30663001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 445
Target Start/End: Complemental strand, 30672116 - 30671681
Alignment:
| Q |
10 |
ttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||| || ||| |||| |||| | ||| || || | |
|
|
| T |
30672116 |
ttaccaggaggaacatatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaaccttgccaatc |
30672017 |
T |
|
| Q |
110 |
caaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagata |
209 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || |||||||| ||| | || || | |||||||||||||| | | ||| ||||||||||||||||| |
|
|
| T |
30672016 |
caaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagata |
30671917 |
T |
|
| Q |
210 |
atcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttctaga |
309 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
30671916 |
atccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctaga |
30671817 |
T |
|
| Q |
310 |
ctccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagtgtt |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||||| |||| ||| | |
|
|
| T |
30671816 |
ctccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttcggtgct |
30671717 |
T |
|
| Q |
410 |
tcatctttcctagagcttcgcattctgctttgaaac |
445 |
Q |
| |
|
|||||||||| | ||||| |||||| ||| |||||| |
|
|
| T |
30671716 |
tcatctttcccaaagctttgcattcagctgtgaaac |
30671681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 445
Target Start/End: Complemental strand, 30626485 - 30626050
Alignment:
| Q |
10 |
ttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||| || ||| |||| |||| | ||| || || | |
|
|
| T |
30626485 |
ttaccaggaggaacatatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaaccttgccaatc |
30626386 |
T |
|
| Q |
110 |
caaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagata |
209 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || |||||||| ||| | || || | |||||| ||||||| | | ||| ||||||||||||||||| |
|
|
| T |
30626385 |
caaagtctcccaagtgggctaccatgtcatcatcaagaagaacattgtttggtttcacatcacattgaactacaacattctcagtaccattgtgaagata |
30626286 |
T |
|
| Q |
210 |
atcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttctaga |
309 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
30626285 |
atccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctaga |
30626186 |
T |
|
| Q |
310 |
ctccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagtgtt |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||| || || ||||||||||| |||| ||| | |
|
|
| T |
30626185 |
ctccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctattcttgaacaacatgtaagaatcttgacaagatttcggtgct |
30626086 |
T |
|
| Q |
410 |
tcatctttcctagagcttcgcattctgctttgaaac |
445 |
Q |
| |
|
|||||||||| | ||||| |||||| ||| |||||| |
|
|
| T |
30626085 |
tcatctttcccaaagctttgcattcagctgtgaaac |
30626050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 29622904 - 29623331
Alignment:
| Q |
10 |
ttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| || || ||| |||||| ||||||||||||| | || |||| ||||||||||||||| | |
|
|
| T |
29622904 |
ttaccaggaggaacatatcctatagttcccttaattgtggaagaagtaatttgatcattacttgaatggtttgaggatccattaatgagcctagctaatc |
29623003 |
T |
|
| Q |
110 |
caaagtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagata |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||| ||| | ||||||| |||||||||||||| ||||| ||| || ||||||||||||| |
|
|
| T |
29623004 |
caaagtctcccaagtgggctacaatgtcatcatcaagaagaacattgcttggcttaacatcacagtgaactacagcttgttctatatcattgtgaagata |
29623103 |
T |
|
| Q |
210 |
atcaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttctaga |
309 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| | ||||||| |||| ||||||||| ||||||| ||||| |||| |||| | |||||||||| |
|
|
| T |
29623104 |
atccaatgcatgagctacatcaagagcaatgtctatcctttgtgtgaggttgagattatggcttccagatccttcattatcgtgcaacatcttttctaga |
29623203 |
T |
|
| Q |
310 |
ctccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcagtgtt |
409 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
29623204 |
ctcatattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttgacaagattccggtgtt |
29623303 |
T |
|
| Q |
410 |
tcatctttcctagagcttcgcattctgc |
437 |
Q |
| |
|
||||||||||||||| || |||||||| |
|
|
| T |
29623304 |
tcatctttcctagagatttacattctgc |
29623331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 114 - 383
Target Start/End: Complemental strand, 1154056 - 1153787
Alignment:
| Q |
114 |
gtctcccaagtgagctacaatgtcatcgtccagaagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagataatca |
213 |
Q |
| |
|
|||||||||||| |||||| ||||||| || |||||||| ||| | ||||||||||||||||||||| | |||||| |||| ||||||||||| ||||| |
|
|
| T |
1154056 |
gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatca |
1153957 |
T |
|
| Q |
214 |
agtgcatgagctacatcaagagcaatgtcaaccctttgtctgagaccgagattatgaattccagacccttcgttattatgcagaagcttttctagactcc |
313 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||| | |||| |||||| ||| || |||||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
1153956 |
agtgcatgagctatatcaagagcaaaatctaccctttttgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcc |
1153857 |
T |
|
| Q |
314 |
ccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagt |
383 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||| |||||||| || |||||| ||||| |||||||| |
|
|
| T |
1153856 |
cgttaggcatgaactcaaaaacaatagccttgaaatcttcacctttgcaatcaatacttgagcaacaagt |
1153787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 434
Target Start/End: Complemental strand, 13564774 - 13564620
Alignment:
| Q |
280 |
ccttcgttattatgcagaagcttttctagactccccttaggcatgaactgaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaac |
379 |
Q |
| |
|
||||||||||| |||| | |||||||||||| || |||| |||||||| |||||||||||||||||| || |||||||||| ||||| |||||||| |
|
|
| T |
13564774 |
ccttcgttattgtgcaacatcttttctagactaccattagacatgaactcaaaaacaatagccttgaaatcgtcacccttattatcaatacttgaacatt |
13564675 |
T |
|
| Q |
380 |
aagttaggatcttgacaaggtttcagtgtttcatctttcctagagcttcgcattc |
434 |
Q |
| |
|
||| || ||||| ||| | |||| ||| ||||||||||||| ||||| |||||| |
|
|
| T |
13564674 |
aaggaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattc |
13564620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 15294166 - 15294048
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || | | | |||||| ||||||||||||||| ||| |||||||| ||||||||||||| | |
|
|
| T |
15294166 |
actttaccaggaggaatatatcctatagttcctttaatcttagaggcaataactttatctttacttgaatgctctatggttccatgaatgagcctagcca |
15294067 |
T |
|
| Q |
107 |
agccaaagtctcccaagtg |
125 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15294066 |
agccaaagtctcccaagtg |
15294048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 15474535 - 15474417
Alignment:
| Q |
7 |
actttaccaggaggaacatatcctatagttcccttgattgtgcaaaaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagcta |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || | | | |||||| ||||||||||||||| ||| |||||||| ||||||||||||| | |
|
|
| T |
15474535 |
actttaccaggaggaatatatcctatagttcctttaatcttagaggcaataactttatctttacttgaatgctctatggttccatgaatgagcctagcca |
15474436 |
T |
|
| Q |
107 |
agccaaagtctcccaagtg |
125 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15474435 |
agccaaagtctcccaagtg |
15474417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 13564895 - 13564816
Alignment:
| Q |
147 |
aagaacgttgatcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagataatcaagtgcatgagcta |
226 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||| ||| |||||||||| | |||||||||||||||| | ||||| ||||| |
|
|
| T |
13564895 |
aagaacgttgctcggcttaacatcacaatgacctaaggcttgctctacatcattgtgaagataatccaatgcataagcta |
13564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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