View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589-Insertion-7 (Length: 435)
Name: NF5589-Insertion-7
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 13466784 - 13466360
Alignment:
| Q |
8 |
tattagccacatcaatgacaaatcggtatttaacatcattctttgcaagtctctcaaaagcagtgttcacataatccattgaaatcacttcaatatctgc |
107 |
Q |
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| T |
13466784 |
tattagccacatcaatgacaaatcggtatttaacatcattctttgcaagtctctcaaaagcagtgttcacataatccattgaaatcacttcaatatctgc |
13466685 |
T |
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| Q |
108 |
tgtgatattgtgcttagctgcaaaatcaatcatgtcttggctctctttcattcctccaccagcactacctgcaattatcttcctccctaatttnnnnnnn |
207 |
Q |
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| T |
13466684 |
tgtaatattgtgctttgctgcaaaatcaatcatgtcttggctctctttcattcctcccccagcactacctgcaattatcttcctccctaatttaaaaaaa |
13466585 |
T |
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| Q |
208 |
nnnngattcttaattagttccaagcagaaattaatcaagagtaaaaataattatcaagcattacaaggttatttataatttaccagacattaaaggcata |
307 |
Q |
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| T |
13466584 |
t---gattcttaattagttccaagcagaaattaatcaagagttaaaataattatcaagcattacaaggttatttataatttaccagacattaaaggcata |
13466488 |
T |
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| Q |
308 |
tatggcaagataggaggtgtaactgatgcaccaactaaaatcaatttgccacatgtcttcaacatttcaattaatgggtggagtgaatgagggcctgaaa |
407 |
Q |
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| T |
13466487 |
tatggcaagataggaggtgtaactgatgcaccaactaaaattaatttgccacatgtcttcaacatttcaattaatgggtagagtgaatgagggcctgaaa |
13466388 |
T |
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| Q |
408 |
ctgtgtctatgatgccgtccattgtgtc |
435 |
Q |
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| T |
13466387 |
ctgtgtctatgatgccgtccattgtgtc |
13466360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 13394427 - 13394332
Alignment:
| Q |
70 |
gtgttcacataatccattgaaatcacttcaatatctgctgtgatattgtgcttagctgcaaaatcaatcatgtcttggctctctttcattcctcca |
165 |
Q |
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| T |
13394427 |
gtgttaacataatccactggtatgacttcgatgtctggttttatattgtgtttagcagcaaaatcaatcatttcttgtgtctctttcatgcctcca |
13394332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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