View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589-Insertion-8 (Length: 231)

Name: NF5589-Insertion-8
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589-Insertion-8
NF5589-Insertion-8
[»] chr1 (6 HSPs)
chr1 (7-137)||(45684724-45684854)
chr1 (138-231)||(20186847-20186940)
chr1 (138-231)||(30339636-30339729)
chr1 (138-231)||(51787272-51787365)
chr1 (144-226)||(9672981-9673062)
chr1 (138-231)||(43740413-43740506)
[»] chr7 (9 HSPs)
chr7 (138-231)||(48057705-48057798)
chr7 (138-231)||(496683-496776)
chr7 (138-231)||(11765707-11765800)
chr7 (138-231)||(2286458-2286551)
chr7 (138-231)||(42535220-42535313)
chr7 (138-228)||(25185942-25186032)
chr7 (145-231)||(23844642-23844728)
chr7 (142-231)||(7527270-7527359)
chr7 (138-231)||(31427266-31427361)
[»] chr3 (6 HSPs)
chr3 (142-231)||(49786397-49786486)
chr3 (137-231)||(8436902-8436996)
chr3 (138-231)||(47940826-47940919)
chr3 (138-231)||(8152977-8153072)
chr3 (138-231)||(29836776-29836868)
chr3 (144-228)||(48778982-48779066)
[»] chr2 (2 HSPs)
chr2 (138-231)||(13922185-13922278)
chr2 (141-229)||(11828960-11829048)
[»] chr5 (5 HSPs)
chr5 (139-231)||(38280279-38280371)
chr5 (138-231)||(25955966-25956059)
chr5 (138-231)||(42250116-42250209)
chr5 (138-231)||(1501375-1501468)
chr5 (138-220)||(7886355-7886437)
[»] chr4 (3 HSPs)
chr4 (138-231)||(52055154-52055247)
chr4 (138-231)||(1158261-1158354)
chr4 (158-231)||(49866670-49866743)
[»] chr8 (2 HSPs)
chr8 (138-231)||(4076950-4077043)
chr8 (143-231)||(3780365-3780453)
[»] chr6 (1 HSPs)
chr6 (138-231)||(33594525-33594618)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 45684724 - 45684854
Alignment:
Q  7 aataaggtgttacagtacagctcagagttgaatctattgttttctttgacagaaagctgaagttagttagacagttaattcccagctatagtagttagtg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45684724 aataaggtgttacagtacagctcagagttgaatctattgttttctttgacagaaagctgaagttagttagacagttaattcccagctatattagttagtg 45684823  T
Q  107 tctgatatattctcgatagctagttaagtgg 137  Q
    |||||||||||||||||||||||||||||||    
T  45684824 tctgatatattctcgatagctagttaagtgg 45684854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 20186940 - 20186847
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtc 20186847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 30339636 - 30339729
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 30339729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 51787272 - 51787365
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtc 51787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 9673062 - 9672981
Alignment:
Q  144 tgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacact 226  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacact 9672981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 43740506 - 43740413
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||| |||| ||| |||||| |  ||| ||||||||||| |||||| |||||||||| | ||| |||| ||| |||||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtc 43740413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 48057798 - 48057705
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 48057705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 496683 - 496776
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtc 496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 11765707 - 11765800
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11765707 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtc 11765800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 2286458 - 2286551
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||| |||||||||| ||||| || |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  2286458 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 2286551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 42535313 - 42535220
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtc 42535220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 25186032 - 25185942
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacacttt 228  Q
    |||||||||| |||| |||| |||||||| ||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| |||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatacttt 25185942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 23844642 - 23844728
Alignment:
Q  145 gatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||| ||| ||||||||  |||||||||| |||  ||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtc 23844728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 7527359 - 7527270
Alignment:
Q  142 ggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||| | |  ||| |||||||||||||||||||| |||||| |||||||||||| ||| ||||||| ||| ||||||||||||    
T  7527359 ggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtc 7527270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 31427361 - 31427266
Alignment:
Q  138 gagtggtgatacatgtacacccataggtg--gcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||| ||| |||||||||  ||||||| | |||||| ||| |||||| |||||||| |||   ||||| ||||||||||||||||    
T  31427361 gagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtc 31427266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 49786397 - 49786486
Alignment:
Q  142 ggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 49786486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 8436996 - 8436902
Alignment:
Q  137 ggagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| || ||||||| || ||||||||||| ||||||||||||||||||||||    
T  8436996 ggagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtc 8436902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 47940826 - 47940919
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||| |||||||||| ||||| || |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  47940826 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 47940919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 8152977 - 8153072
Alignment:
Q  138 gagtggtgatacatgt--acacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtc 8153072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 29836868 - 29836776
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||| |||| |||  || |||| |||||||||| ||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtc 29836776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 48779066 - 48778982
Alignment:
Q  144 tgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacacttt 228  Q
    ||||||||| ||||| ||||||||||||| || |||||| |||||||||| |||||||| |||  |||||| ||| |||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacacttt 48778982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 13922185 - 13922278
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtc 13922278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 11828960 - 11829048
Alignment:
Q  141 tggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 229  Q
    |||||| ||||| |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttg 11829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 38280371 - 38280279
Alignment:
Q  139 agtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 38280279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 25956059 - 25955966
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 25955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 42250116 - 42250209
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||| |||||||||  || |||| |||||||||| |||||| |||||||||||| ||| | ||||||||||||||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtc 42250209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 1501468 - 1501375
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||| | | ||||||||| ||||||||||||||| ||||||||||||| ||||| ||  ||||||||||| | ||||||||||    
T  1501468 gagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtc 1501375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 7886355 - 7886437
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccaca 220  Q
    |||||||||| |||| | ||  ||||||| ||||||||||||||| |||||| |||||||||||| ||| |||| | ||||||    
T  7886355 gagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccaca 7886437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 52055247 - 52055154
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||||||||||||| |||  |||||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 52055154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 1158354 - 1158261
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||| ||||||||| ||| | ||||  ||| ||||||||||||| |||||| |||||||||||| ||| ||||||||| ||||||| ||||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtc 1158261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 49866670 - 49866743
Alignment:
Q  158 ccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||| |||||| ||||||| | |||| ||| |||||||| ||| | |||||| || ||||||||||||    
T  49866670 ccataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtc 49866743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 4077043 - 4076950
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||| ||  ||||||||||||||||| ||||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtc 4076950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 3780453 - 3780365
Alignment:
Q  143 gtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||| ||  |||| |||| | ||||||||||||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtc 3780365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 33594618 - 33594525
Alignment:
Q  138 gagtggtgatacatgtacacccataggtggcatacacacttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtc 231  Q
    |||| |||||||||| ||| |||| |||||||||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtc 33594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University