View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589_high_10 (Length: 494)

Name: NF5589_high_10
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589_high_10
NF5589_high_10
[»] chr7 (32 HSPs)
chr7 (5-235)||(22876365-22876601)
chr7 (5-211)||(22805758-22805965)
chr7 (87-349)||(22841169-22841446)
chr7 (5-296)||(22873595-22873878)
chr7 (5-201)||(22831480-22831677)
chr7 (5-295)||(22894393-22894712)
chr7 (5-201)||(22840507-22840704)
chr7 (1-204)||(22815472-22815682)
chr7 (5-207)||(22842619-22842825)
chr7 (41-201)||(22885980-22886149)
chr7 (5-176)||(22858868-22859040)
chr7 (5-167)||(22810093-22810258)
chr7 (1-132)||(22889737-22889868)
chr7 (393-470)||(22894777-22894854)
chr7 (393-470)||(22841468-22841545)
chr7 (388-453)||(22806123-22806188)
chr7 (388-474)||(22816011-22816096)
chr7 (382-474)||(22831832-22831924)
chr7 (387-454)||(22810467-22810534)
chr7 (392-458)||(22842991-22843057)
chr7 (5-126)||(22898712-22898836)
chr7 (40-93)||(22840992-22841045)
chr7 (227-296)||(22840745-22840814)
chr7 (127-191)||(22881124-22881189)
chr7 (255-296)||(22810360-22810401)
chr7 (382-474)||(22859169-22859262)
chr7 (402-471)||(22886327-22886396)
chr7 (5-62)||(22881019-22881076)
chr7 (413-461)||(22899058-22899104)
chr7 (415-470)||(22840895-22840950)
chr7 (255-296)||(22806031-22806072)
chr7 (221-286)||(22886179-22886243)
[»] chr1 (2 HSPs)
chr1 (5-171)||(21150098-21150265)
chr1 (382-474)||(21149814-21149906)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 22876365 - 22876601
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaataataatgcttgt 104  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| |||| |||||||||||| | ||||| |||||||||||| |    
T  22876365 atgaaactgttttcttcacttgctaccaatgtaacaagataaaacaacatgaacacaagcctgaagaacatgattatagtttgtggataataatgcttat 22876464  T
Q  105 gtagttctgttcggtgtttattatttataag------attttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctgg 198  Q
    | |||||||||   |||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22876465 gcagttctgttgattgtttattatttattatttatatattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctgg 22876564  T
Q  199 aacttaacttagccacgttttttcaaatggttactaa 235  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22876565 aacttaacttagccacgtattttcaaatggttactaa 22876601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 22805758 - 22805965
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttg 103  Q
    ||||||||||| |||||||||||||| |  |||| | || |||||||||| ||||||||| |||||||||||||||| | ||| |||| |||||||||||    
T  22805758 atgaaactgttatcttcacttgctactaatgtaacatgaaaaaacaacataaacacaagtttgaggaacatgattatagtttgagaatgaataatgcttg 22805857  T
Q  104 tgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaactt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |    
T  22805858 tgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatgtcctggaacat 22805957  T
Q  204 aacttagc 211  Q
    ||||||||    
T  22805958 aacttagc 22805965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 87 - 349
Target Start/End: Original strand, 22841169 - 22841446
Alignment:
Q  87 gtgaataataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaa 186  Q
    |||||||||||| ||| || |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||    
T  22841169 gtgaataataattcttatgcagttatgttcagtgtttattatttataagattttgtccaaagtgaagaaaaaattgcaagtcttatttgggtcctactaa 22841268  T
Q  187 gaaatgtcctggaacttaacttagccacgttttttca---------------aatggttactaaagttgcatatctcatttgggtccaactaagaaatgt 271  Q
    ||||||||||||||| ||||||||| | |  || |||               ||||||||||||  |||| |||||||||||||||| ||||||||||||    
T  22841269 gaaatgtcctggaacctaacttagctatgaattatcaccaaaagaaacatcaaatggttactaatattgcgtatctcatttgggtcctactaagaaatgt 22841368  T
Q  272 cttatttagtttagtaaaaatgaatttttgtgttactcatatggtaccatttgaataattgtgcacatttgaaccacc 349  Q
    || |||||||||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||    
T  22841369 ctcatttagtttagtaaaaatgaatttttgtgtaactcatttgggaccatttgaatagttgtgcacatttgaaccacc 22841446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 22873595 - 22873878
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaataataatgcttgt 104  Q
    ||||||||||| |||||||||||||| |  |||| ||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||| |    
T  22873595 atgaaactgttgtcttcacttgctactaatgtaacaagataaaacaacatgagcacaagcctgaggaacatgattatggattgtgaataataatgcttat 22873694  T
Q  105 gtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaactta 204  Q
    | |||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||  |||||| |||| || |||||| ||| ||||| ||    
T  22873695 gcagttctattcagtgtttattatttatatgattttgtcctaagtgaagaaaaatttgcaggtcacatttggttcctgcttagaaatatcccggaaccta 22873794  T
Q  205 acttagccacgttttttcaaatggttactaaagttgcatatctcatttgggtccaactaagaaatgtcttatttagtttagtaaaaatgaat 296  Q
    ||||| | |||        | |  |||||||| |||||| |||||||||||||| |||||||||||||| ||||||| || | |||||||||    
T  22873795 acttacctacg--------acttattactaaaattgcatttctcatttgggtcctactaagaaatgtctcatttagtatactgaaaatgaat 22873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 22831480 - 22831677
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttg 103  Q
    ||||||||| | |||||||||||||| |  |||| |||| |||||||||| ||||||||  |||||||||||||||| | |||||||| |||||||||||    
T  22831480 atgaaactgctgtcttcacttgctacaaatgtaacaagaaaaaacaacataaacacaagcttgaggaacatgattatagtttgtgaatgaataatgcttg 22831579  T
Q  104 tgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaac 201  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||  |||||||||||||||||||||||    
T  22831580 tgtagttctgttcggtgtttattatttataagattttgtccaaagtgaagtaaaaattgcatgcctaatttgggacctactaagaaatgtcctggaac 22831677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 22894393 - 22894712
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaataataatgcttgt 104  Q
    |||||||| || |||||||||| |||||  |||| |||| |||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||| |    
T  22894393 atgaaacttttgtcttcacttggtaccaatgtaacaagaaaaaacaacataaacacaagcctgaggaacatgattatagtttgtgaataataatgcttat 22894492  T
Q  105 gtagttctgttcggtgtttattatttat--------------aagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaa 190  Q
      |||||||||| |||||||||||||||              |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  22894493 acagttctgttcagtgtttattatttattatttattatgtataagattttgtcctaggtgaagaaaaaattgcaagtctaatttgggtcctactaagaaa 22894592  T
Q  191 tgtcctggaacttaacttagccacgtttt---------------ttcaaatggttactaaagttgcatatctcatttgggtccaactaagaaatgtctta 275  Q
    |||| |||||| ||||||||| | |  ||                |||||||||||||||| | || |||||||||||||||| |||||||||||||| |    
T  22894593 tgtcttggaacctaacttagctatgaattatcaccaaaagaaacatcaaatggttactaaaatcgcgtatctcatttgggtcctactaagaaatgtctca 22894692  T
Q  276 tttagtttagtaaaaatgaa 295  Q
    ||||||||||||||||||||    
T  22894693 tttagtttagtaaaaatgaa 22894712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 22840507 - 22840704
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaataa-taatgcttg 103  Q
    ||||||||||| |||  |||||||||||  |||| | || |||||||||||||||||||| ||| |||||||||||| | |||||||||| | ||||||     
T  22840507 atgaaactgttgtctatacttgctaccaatgtaacatgaaaaaacaacatgaacacaagtttgatgaacatgattatagtttgtgaataaatgatgcttc 22840606  T
Q  104 tgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaac 201  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||  ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  22840607 tgtagttctgtttggtgtttattatttataagattttgtggtaagtgaaagaaaaatttcatgtctaatttgggtcctactaagaaatgtcctggaac 22840704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22815472 - 22815682
Alignment:
Q  1 atatatgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattatt-ggttgtgaat-aataat 98  Q
    ||||||||||||||| ||| ||||||||||||  ||||  ||| ||||||||||||||||| || ||||||||||||||||| | |||||||| || |||    
T  22815472 atatatgaaactgttgtctacacttgctaccaatgtaacgagaaaaaacaacatgaacacatgtttgaggaacatgattattagtttgtgaatgaacaat 22815571  T
Q  99 gcttgtgtagttctgttcggtg-tttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcc----tactaagaaatgt 193  Q
    |||| |||||||||||| | || ||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||    |||||||||||||    
T  22815572 gcttctgtagttctgtttgatgttttgttatttataagattttgtgctaagtgaaggaaaaattgcatgtctaatttgggtcctaggtactaagaaatgt 22815671  T
Q  194 cctggaactta 204  Q
    |||||||||||    
T  22815672 cctggaactta 22815682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 22842619 - 22842825
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttg 103  Q
    ||||||||||| ||||||||||||||||  |||| |||| |||||||||| ||||||||  |||||||||||||||||| |||||||| || |||||||     
T  22842619 atgaaactgttgtcttcacttgctaccaatgtaacaagaaaaaacaacataaacacaagcttgaggaacatgattattgtttgtgaatgaacaatgcttc 22842718  T
Q  104 tgtagtt---ctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaa 200  Q
    |||||||   ||||||  |||||||||||||||||||||||| | |||||||||  ||| | | | |||||||||| |||||||||||||||||||||||    
T  22842719 tgtagttctgctgttcaatgtttattatttataagattttgtgccaagtgaagatgaaaataccaatctaatttgggtcctactaagaaatgtcctggaa 22842818  T
Q  201 cttaact 207  Q
    | |||||    
T  22842819 cctaact 22842825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 22885980 - 22886149
Alignment:
Q  41 agataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttgtgtagttctgtt--------cggtgtttattattta 131  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||| |||| ||| |||||| ||||||||||||        ||||||||||||||||    
T  22885980 agataaagcaacatgaacacaagtctgaggaacatgattatagtttgagaatgaatcatgcttctgtagttctgttcgagtgttcggtgtttattattta 22886079  T
Q  132 taagattttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaac 201  Q
    ||||||||||| |||||||||| |||||||||| |||||||| || |||||||||||||| |||| ||||    
T  22886080 taagattttgtgctaagtgaaggaaaaattgcatgtctaattcgggtcctactaagaaatttcctagaac 22886149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 22858868 - 22859040
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttg 103  Q
    ||||||| ||| ||||||||||||||||  |||| |||  || | ||||| || ||||   |||||||||||||| | | |||||||| || ||||||||    
T  22858868 atgaaaccgttgtcttcacttgctaccaatgtaacaagcaaacataacataaagacaaacttgaggaacatgattttagtttgtgaatgaacaatgcttg 22858967  T
Q  104 tgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgg 176  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  22858968 tgtagttctgttcggtgtttgttatttataagattttgtgctaagtgaaggaaaaattgcatgtctaatttgg 22859040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 22810093 - 22810258
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttg 103  Q
    ||||||||||| |||| ||||||||| |  |||| |||| |||||||||| ||||||||  |||||||||||||||| | |||||||| ||||||||||     
T  22810093 atgaaactgttatctttacttgctactaatgtaacaagaaaaaacaacataaacacaagcttgaggaacatgattatagtttgtgaatgaataatgcttc 22810192  T
Q  104 tgtagtt---ctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagt 167  Q
    |||||||   ||||||  |||||||||||||||||||||| | |||||||||||||||||| |||||    
T  22810193 tgtagttctgctgttcaatgtttattatttataagatttt-ttctaagtgaagaaaaaattacaagt 22810258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22889737 - 22889868
Alignment:
Q  1 atatatgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaataataatgc 100  Q
    ||||||||||||||| ||||||||||| ||||  |||| | || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  22889737 atatatgaaactgttgtcttcacttgcaaccaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattataggttgtgaataataatgc 22889836  T
Q  101 ttgtgtagttctgttcggtgtttattatttat 132  Q
    || |  ||||| ||||  ||||| ||||||||    
T  22889837 ttatacagttcggttcattgtttcttatttat 22889868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 393 - 470
Target Start/End: Original strand, 22894777 - 22894854
Alignment:
Q  393 ttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttctt 470  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  22894777 ttttcaatgtttacgtattgagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22894854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 393 - 470
Target Start/End: Original strand, 22841468 - 22841545
Alignment:
Q  393 ttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttctt 470  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  22841468 ttttcaatgtttacgtattgaatgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 22806123 - 22806188
Alignment:
Q  388 aatgtttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatca 453  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||    
T  22806123 aatgtttttcaatgtttacatattaagtgtttgatgctaaattgaatatgtgaaatcaagacatca 22806188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 388 - 474
Target Start/End: Original strand, 22816011 - 22816096
Alignment:
Q  388 aatgtttttcaatgtttacgt-attcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttcttaaaa 474  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||    
T  22816011 aatgtttttcaatgttcacattattaagtgtttgatgctaaattgaatatg--aaattaaaacatcagtgtcatctaatttcttaaaa 22816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 22831832 - 22831924
Alignment:
Q  382 tgggagaatgtttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttcttaaaa 474  Q
    |||| |||| |||||||| || | | |||| |||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||    
T  22831832 tgggggaatatttttcaacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaaa 22831924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 454
Target Start/End: Original strand, 22810467 - 22810534
Alignment:
Q  387 gaatgtttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaa 454  Q
    ||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||| ||||||    
T  22810467 gaatgtttttcaacgtttacatattaagtgttcgatgctaaattgaatatgtgaaattaaatcatcaa 22810534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 458
Target Start/End: Original strand, 22842991 - 22843057
Alignment:
Q  392 tttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtc 458  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  22842991 tttttcaatttttacatattaagtgtttgatgctaaattgaatatgtgaaatcaaaacatctatgtc 22843057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 22898712 - 22898836
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgatta---ttggttgtgaataataatgct 101  Q
    ||||||||||| |||| |||||||||||  |||| | || |||||||||||||| ||||  |||||||||||||||   | | ||||||||||||||| |    
T  22898712 atgaaactgttatctttacttgctaccaatgtaacatgaaaaaacaacatgaacgcaagcttgaggaacatgattatagtagtttgtgaataataatgat 22898811  T
Q  102 tgtgtagttctgttcggtgtttatt 126  Q
    | ||||||||||||  |||||||||    
T  22898812 tctgtagttctgtttagtgtttatt 22898836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 22840992 - 22841045
Alignment:
Q  40 aagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaata 93  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22840992 aagataaaacaacatgaacacaagtccaaggaacatgattattggttgtgaata 22841045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 22840745 - 22840814
Alignment:
Q  227 ggttactaaagttgcatatctcatttgggtccaactaagaaatgtcttatttagtttagtaaaaatgaat 296  Q
    |||||||||| |||| | | |||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  22840745 ggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaat 22840814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 22881124 - 22881189
Alignment:
Q  127 atttataagattttgtcctaagtgaagaaaaaattgcaagtcta-atttggatcctactaagaaat 191  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||  ||||||||||||||    
T  22881124 atttataagattttgtcctaagtgaagaaaaaattacaagtcaacatttgtgtcctactaagaaat 22881189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 22810360 - 22810401
Alignment:
Q  255 gtccaactaagaaatgtcttatttagtttagtaaaaatgaat 296  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  22810360 gtccaactaagaaatgtctcatttagtttagtaaaaatgaat 22810401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 22859169 - 22859262
Alignment:
Q  382 tgggagaatgtttttcaatgtttacgtattcagtgt-ttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttcttaaaa 474  Q
    |||| ||||||||||||| |||||  |||||   || ||||||| |||||||||||||||||||||||||| |||||  || ||||||||||||    
T  22859169 tgggggaatgtttttcaacgtttatatattcgaagtcttgatgcaaaattgaatatgtgaaattaaaacattaatgttgtctaatttcttaaaa 22859262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 471
Target Start/End: Original strand, 22886327 - 22886396
Alignment:
Q  402 tttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttctta 471  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||  ||||||||  || |||||||||    
T  22886327 tttacatattaagtgtttgatgctaaattgaatatgtgaaatttaattatcaatgtgttctaatttctta 22886396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 22881019 - 22881076
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaa 62  Q
    ||||||||||||||||||||||||| ||  |||| |||| |||||||||| |||||||    
T  22881019 atgaaactgttttcttcacttgctatcaatgtaacaagaaaaaacaacataaacacaa 22881076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 22899058 - 22899104
Alignment:
Q  413 agtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatc 461  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  22899058 agtgtttgat-ctaaattgaatatgtgaaatt-aaacatcaatgtcatc 22899104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Original strand, 22840895 - 22840950
Alignment:
Q  415 tgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttctt 470  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||  || ||||||||    
T  22840895 tgtttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttctt 22840950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 22806031 - 22806072
Alignment:
Q  255 gtccaactaagaaatgtcttatttagtttagtaaaaatgaat 296  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  22806031 gtcctactaagaaatatctcatttagtttagtaaaaatgaat 22806072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 22886179 - 22886243
Alignment:
Q  221 tcaaatggttactaaagttgcatatctcatttgggtccaactaagaaatgtcttatttagtttagt 286  Q
    ||| |||||||||||| |||| | | |||| ||||||| |||||||||||||| ||||||||||||    
T  22886179 tcacatggttactaaaattgcct-tatcatctgggtcctactaagaaatgtctcatttagtttagt 22886243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 21150265 - 21150098
Alignment:
Q  5 atgaaactgttttcttcacttgctaccagcgtaataagataaaacaacatgaacacaagtctgaggaacatgattattggttgtgaat-aataatgcttg 103  Q
    ||||||||||| ||||||||||||||||  |||| ||||| ||||||||| ||||||||  |||||||||||||||| | |||||||| || |||||||     
T  21150265 atgaaactgttatcttcacttgctaccaatgtaacaagattaaacaacataaacacaagcttgaggaacatgattatagtttgtgaatgaacaatgcttc 21150166  T
Q  104 tgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaa 171  Q
    |||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  21150165 tgtagttctgtttgatgtttattatttataagattttgtgctaagtgaaggaaaaattgcatgtctaa 21150098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 21149906 - 21149814
Alignment:
Q  382 tgggagaatgtttttcaatgtttacgtattcagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcatccaatttcttaaaa 474  Q
    |||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  21149906 tgggtgaatgtttttcaatgtttacgtgttaagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttctaaaaa 21149814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University