View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_high_13 (Length: 442)
Name: NF5589_high_13
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Original strand, 40039857 - 40040283
Alignment:
| Q |
16 |
atactatactagtctatggctgactgacagtactcacagtcacagcagccgcgttgataattatcagagaaagaaagaaagaaatttgttctatcatcat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40039857 |
atactatactagtctatggctgactgacagtactcacagtcacagcagccgcgttgataattatcagagaaagaaagaaagaagtttgttctatcatcat |
40039956 |
T |
|
| Q |
116 |
cttc-------------------tctctttgctttcttgctacatcaatatactctcaactctatccagttatatcttcacctatttaggctctcaagtc |
196 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40039957 |
cttctctcttttctacctccttctctctttgcttgcttgctacatcaatatactctcaactatatccagttatatcttcacctatttaggctctcaagtc |
40040056 |
T |
|
| Q |
197 |
tgaaggcttcttcttttgctacatagctgtcagctctattcacgtgtaacacctatttcaataatatatagtacttttgtctcaaatagcaaaattgaat |
296 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40040057 |
tcaaggcttcttcttgtgctacatagctgtcagctctattcacgtgtaacacctatttcaataatatatagtacttttgtctcaaatagcaaaattgaat |
40040156 |
T |
|
| Q |
297 |
atatatttatagatataattctactaattaatttgttattctgttttaatcaggagagtttccatttcaaagatgatgtctgaagaagcagtttccgata |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40040157 |
atatatttatagatataattctactaattaatttgttattctgttttaatcagtggagtttccatttcaaagatgatgtctgaagaagcagtttctgata |
40040256 |
T |
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| Q |
397 |
cttccaacttcagaggcacctcaaact |
423 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40040257 |
cttccaacttcagaggcacctcaaact |
40040283 |
T |
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