View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_high_16 (Length: 409)
Name: NF5589_high_16
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 65 - 398
Target Start/End: Complemental strand, 26799792 - 26799459
Alignment:
| Q |
65 |
gataaaattgtctgtgtataaatactttatattgaagtagcaaaacctgaatcaaacctgagaaatggaggcatttaaagtagcaagtgaaggagttgtt |
164 |
Q |
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| T |
26799792 |
gataaaattgtctgtgtataaatactttatattgaagtagcaaaacctgaatcacacttgagaaatggaggcatttaaagtagcaagtgaaggagttggt |
26799693 |
T |
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| Q |
165 |
atgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttgtgcctaggtttgtcattgataatgt |
264 |
Q |
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| T |
26799692 |
atgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttgtgcttaggtttgtcattgataatgt |
26799593 |
T |
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| Q |
265 |
tggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttataaatttgaggctattgaggatgatgc |
364 |
Q |
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| T |
26799592 |
tggttgaaaaagtatacatggcaattgtcatttgttatgtgaagttgtttaagagaacaccagagaagtgttataaatttaaggctattgaggatgatgt |
26799493 |
T |
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| Q |
365 |
tgagttgggaaactccaattatcccatggttctt |
398 |
Q |
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| T |
26799492 |
tgagttgggaaactctaattatcccatggttctt |
26799459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 127 - 398
Target Start/End: Complemental strand, 26823822 - 26823551
Alignment:
| Q |
127 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatg |
226 |
Q |
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| T |
26823822 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatg |
26823723 |
T |
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| Q |
227 |
gacagtgtatttgtgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacacca |
326 |
Q |
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| T |
26823722 |
gacagtgtatttgtgcttaggtttgtcattgataatgttggttgagaaagtttacatggcaattgtcatttgttatgtgaagttgtttaaaagaacacca |
26823623 |
T |
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| Q |
327 |
gagaaacgttataaatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttctt |
398 |
Q |
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| T |
26823622 |
gagaaacgttataaatttgaggctattgaggatgatgttgagttgggaaactcctattatcccatggttctt |
26823551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 129 - 398
Target Start/End: Complemental strand, 26786952 - 26786683
Alignment:
| Q |
129 |
atggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatgga |
228 |
Q |
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| T |
26786952 |
atggaggtgtttcaagtagctagtgaaggagttggtatgcaacttgcgtttatttggaggaaaataagagaacctttgatcgtgccaatgctgagagctg |
26786853 |
T |
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| Q |
229 |
cagtgtatttgtgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccaga |
328 |
Q |
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| T |
26786852 |
cagtgtttatctgcctaagcatgtcattgatgatattggttgagatagtttacatgggaattgtgatttgtttagtgaagttgtttaaaagaacacctga |
26786753 |
T |
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| Q |
329 |
gaaacgttataaatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttctt |
398 |
Q |
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|||||||||||||| ||| ||||| ||||||||| |||||||| |||||| ||||| || || |||||| |
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| T |
26786752 |
gaaacgttataaatgggagactattaaggatgatgttgagttggaaaactctaattaccctattgttctt |
26786683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 398
Target Start/End: Complemental strand, 26833630 - 26833472
Alignment:
| Q |
240 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
339 |
Q |
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|||||||| |||| ||||| ||||||||||||| ||| ||| ||| |||||| |||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
26833630 |
tgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttata |
26833531 |
T |
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| Q |
340 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttctt |
398 |
Q |
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||| ||| ||||| ||||||||| ||||||||||||||| ||||| || ||||||||| |
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| T |
26833530 |
aatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttctt |
26833472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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