View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_high_17 (Length: 404)
Name: NF5589_high_17
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 72 - 397
Target Start/End: Complemental strand, 30960987 - 30960660
Alignment:
| Q |
72 |
ctacaaaaagagagagtaaggtgtggagcaagacctattgattcatgagaaaacgtaatgatgatctacc---cagaaagtaaaaataacttttaactca |
168 |
Q |
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| T |
30960987 |
ctacaaaaagagagagtaaggtgtggagcaagacctattgattcatgagaaaacgtaatgatgatctacctcccagaaagtaaaaataacttttaactca |
30960888 |
T |
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| Q |
169 |
aaataaatctacttccacttcttttactacttctattaattgttttaagtgtcttgggatggggcacattgcttcccaatgtacaaacaagagagctttg |
268 |
Q |
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| T |
30960887 |
aa-taaatctacttccacttcttttactacttctattaattgttttaagtgtcttgggatggggtacattgcttcccaatgtacaaacaagagagctttg |
30960789 |
T |
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| Q |
269 |
gtcatcaaaggatggattaatgatgatcgaaaatgaaaaaagaaagtttacattcttctcttaggccatctagtaagaatgaagaagggagtgaggaact |
368 |
Q |
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| T |
30960788 |
gtcatcaaaggatggattaatgatgatcgaaagtgaaaaaagaaagtttacattcttctcttaggccatctagtaagaatgaagaagggagtgaggaact |
30960689 |
T |
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| Q |
369 |
acaccttccagagaatttgctgatgatgt |
397 |
Q |
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| T |
30960688 |
acacctctcagagaatttgcttatgatgt |
30960660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 3806353 - 3806436
Alignment:
| Q |
193 |
tactacttctattaattgttttaagtgtcttgggatggggcacattgcttcccaatgtacaaacaagagagctttggtcatcaa |
276 |
Q |
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| T |
3806353 |
tactacttctacgaaatgctttaagtgtcttggaagggggcacattgcttcccattgtccaaacaaaagagttttggtcatcaa |
3806436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 38741971 - 38741921
Alignment:
| Q |
74 |
acaaaaagagagagtaaggtgtggagcaagacctattgattcatgagaaaa |
124 |
Q |
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||||||||| |||||||||||| ||||||||||||||||| | |||||||| |
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| T |
38741971 |
acaaaaagaaagagtaaggtgtagagcaagacctattgatgcttgagaaaa |
38741921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 38784555 - 38784605
Alignment:
| Q |
74 |
acaaaaagagagagtaaggtgtggagcaagacctattgattcatgagaaaa |
124 |
Q |
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||||||||| ||||||||||| ||||||||||||||||| | |||||||| |
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| T |
38784555 |
acaaaaagaaagagtaaggtgaagagcaagacctattgatgcttgagaaaa |
38784605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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