View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_high_23 (Length: 359)
Name: NF5589_high_23
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 41117012 - 41117351
Alignment:
| Q |
1 |
aagaggaagagagatttttggattggaagagagaggacccaaatcaaaggtgaaaaggagaagtttgaagtttgtgagccaagtaatgaagaaggaagtg |
100 |
Q |
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| T |
41117012 |
aagaggaagagagatttttggattggaagagagaggacccaaatcaaaggtgaaaaggagaagtttgaagtttgtgagccaagtaatgaagaaggaagtg |
41117111 |
T |
|
| Q |
101 |
atacctattgggagaactaaagagagttgaaatggtaggatggtgaagaggtaaaaaattggagacaaggacagaaaccttaatatgccttttggaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41117112 |
atacctattgggagaactaaagagagttgaaatggtaggatggtgaagaggtaaaaaattggagacaaggacagaaaccttaatatgccttttggaatgt |
41117211 |
T |
|
| Q |
201 |
ttgaggatatgaaataacagtaagatagtgaagctaggactttgagccataccttgattaagttcttgatttctacttcaagttcattgcactttgggct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41117212 |
ttgaggatatgaaataacagtaagatagtgaagctaggactttgagccataccttgattaagttcttgatttctacttcaagttcattgcactttgggct |
41117311 |
T |
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| Q |
301 |
tatcatgatctattccttctagctcagcttacgatgattt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41117312 |
tatcatgatctattccttctagctcagcttacgatgattt |
41117351 |
T |
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