View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_high_30 (Length: 274)
Name: NF5589_high_30
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 29753911 - 29753648
Alignment:
| Q |
1 |
ccttaaatcccattattttannnnnnnaatttagggctctttgaattcttcactattgttttcaattttcattagcgtgaagaaagattactggtcaaac |
100 |
Q |
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| T |
29753911 |
ccttaaatcccattattttatttttttaatttagggctctttgaattcttcactattgttttcaattttcattagcgtgaagaaagattactggtcaaac |
29753812 |
T |
|
| Q |
101 |
aggtgcgtgggcgagagaaattataaagtaaggtgtagttttaaaagttcaagtcaattagaatcgttgatttaaatccattggatgttatctactcctc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29753811 |
aggtgcgtggtcgagagaaattataaagtaaggtgtagttttaaaagttcaagtcaattagaatcgttgatttaaatccattggatgttatctactcctc |
29753712 |
T |
|
| Q |
201 |
tcatctctcgtaatgattggtgctcgcattttgatattgtgagagatgagagaggacttgatatt |
265 |
Q |
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| T |
29753711 |
tcatctcttgtaatgactagtgctcgca-tttgatattgtgagagatgagagaggacttgatatt |
29753648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 1712890 - 1712977
Alignment:
| Q |
122 |
tataaagtaaggtgtagttttaaaagttcaagtcaattagaatcgttgatttaaatccattggatgttatctactcctctcatctctc |
209 |
Q |
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|||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| | |||||||||||||| |
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| T |
1712890 |
tataaaataaggtgcagttttaaaagttcatgtcacttagaatcgttgatttaaatccaatggatgttattcattcctctcatctctc |
1712977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 26185844 - 26185898
Alignment:
| Q |
126 |
aagtaaggtgtagttttaaaagttcaagtcaattagaatcgttgatttaaatcca |
180 |
Q |
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|||||||||| |||||| |||||| || ||||||||||||||||| ||||||||| |
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| T |
26185844 |
aagtaaggtgcagttttgaaagttaaactcaattagaatcgttgaattaaatcca |
26185898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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