View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_high_34 (Length: 240)
Name: NF5589_high_34
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_34 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0237 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 43470205 - 43469984
Alignment:
| Q |
17 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctacttgcccnnnnnnnnnnnnnnnntgaagacaaagctcctcccctatgaacaaaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
43470205 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctacctgcacacaaaaaaaaaaaa--tgaagacaaagctcctcccctatgaacaaaaat |
43470108 |
T |
|
| Q |
117 |
tgatgacggtaagcaagttgtgnnnnnnntggtcattcatataatgttttcctctctcatgaaaacacattgaattagcttttcagatctatctgctccc |
216 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43470107 |
tgatgacggtaagcaagttgtgaaaaaaattgtcattcatataatattttcctctctcatgaaaacacattgaattagcttttcagatctatctgctccc |
43470008 |
T |
|
| Q |
217 |
tttattttcttgtcaaactcaacc |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43470007 |
tttattttcttgtcaaactcaacc |
43469984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 36220251 - 36220030
Alignment:
| Q |
17 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctacttgcccnnnnnnnnnnnnnnnntgaagacaaagctcctcccctatgaacaaaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
36220251 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctacttgcacacaaaaaaaaaaa---tgaagacaaagctcatcccctatgaacaaaaat |
36220155 |
T |
|
| Q |
117 |
tgatgacggtaagcaagttgtgnnnnnnn-tggtcattcatataatgttttcctctctcatgaaaacacattgaattagcttttcagatctatctgctcc |
215 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
36220154 |
tgatgacaataagcaagttgtgaaaaaaaattgtcattcatataatgttttcctctctcatgaaaacacgttgaattagcttttcatatctatctgctcc |
36220055 |
T |
|
| Q |
216 |
ctttattttcttgtcaaactcaacc |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36220054 |
ctttattttcttgtcaaactcaacc |
36220030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 4019 - 3865
Alignment:
| Q |
84 |
tgaagacaaagctcctcccctatgaacaaaaattgatgacggtaagcaagttgtgnnnnnnntggtcattcatataatgttttcctctctcatgaaaaca |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4019 |
tgaagacaaagctcctcccctatgaacaaaaactgatgacggtatgcaagttgtgaaaaaaattgtcattcatataatgttttcctctctcatgaataca |
3920 |
T |
|
| Q |
184 |
cattgaattagcttttcagatctatctgctccctttattttcttgtcaaactcaa |
238 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3919 |
cattaaattagcttttcaaatctatctgctccctttattttcttgtcaaactcaa |
3865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4273 - 4229
Alignment:
| Q |
17 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctac |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4273 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctac |
4229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 29857817 - 29857663
Alignment:
| Q |
84 |
tgaagacaaagctcctcccctatgaacaaaaattgatgacggtaagcaagttgtgnnnnnnntggtcattcatataatgttttcctctctcatgaaaaca |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29857817 |
tgaagacaaagctcctcccctatgaacaaaaactgatgacggtatgcaagttgtgaaaaaaattgtcattcatataatgttttcctctctcatgaataca |
29857718 |
T |
|
| Q |
184 |
cattgaattagcttttcagatctatctgctccctttattttcttgtcaaactcaa |
238 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29857717 |
cattaaattagcttttcaaatctatctgctccctttattttcttgtcaaactcaa |
29857663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 29858072 - 29858028
Alignment:
| Q |
17 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctac |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29858072 |
agtcaagaacaaagtttctttttatgttctaaattgtagttctac |
29858028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University