View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_high_5 (Length: 607)
Name: NF5589_high_5
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_5 |
 | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 14529509 - 14530091
Alignment:
| Q |
1 |
agtttatttcaaacaaggtgagaattctaaattaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14529509 |
agtttatttcaaacaaggtgagaatcctaaattaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
14529608 |
T |
|
| Q |
101 |
aaagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14529609 |
aaagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgttgaagatcattgttaatggattgt |
14529708 |
T |
|
| Q |
201 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaatttgtatggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14529709 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtg----tacttgaaccttatgaaaattgggtaaaaattcgtatggc |
14529804 |
T |
|
| Q |
301 |
atgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14529805 |
atgttggtagtatatgcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
14529904 |
T |
|
| Q |
401 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggctacgggtttgatgtggatttttccg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14529905 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggctacgggtttgatgtggatttttccg |
14530004 |
T |
|
| Q |
501 |
aaataagctacaatgtgaattcaaattggttataaatgatttcaggttaattatagatgcacttatggttgagcatgaagttggttg |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14530005 |
aaataagctacaatgtgaattcaaattggttataaatgatttcaggttaattatagatgcacttatggttgagcatgaagttggttg |
14530091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 186 - 529
Target Start/End: Original strand, 2745933 - 2746279
Alignment:
| Q |
186 |
ttgttaatgggttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggt |
285 |
Q |
| |
|
||||| |||| || ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2745933 |
ttgttgatggtttattgctgatgtaagtaagatgagttggtgatcaaaatgtagtattattgataaaagtgattgtacttgaaccttatgaaaattgggt |
2746032 |
T |
|
| Q |
286 |
aaaaattt-gtatggcatgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttc |
384 |
Q |
| |
|
||||| || ||||||||| || |||||||||||||||||| | || ||||| | ||||||||||||| || ||| |||||||||||||||||||| ||| |
|
|
| T |
2746033 |
aaaaacttcgtatggcatatttgtagtatattcatcatatatattgttgtgttacctggaattaagtaattattggagtttcggattctacacttaattc |
2746132 |
T |
|
| Q |
385 |
ccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaa--tggctacgggt |
482 |
Q |
| |
|
|||||||||| ||||||| |||| ||| | |||||| ||||||| ||||||||| | ||| ||| |||||| || |||||||||| || |||||||| |
|
|
| T |
2746133 |
acttcagtttggatataaattttgtatgttttggattaggaatggattcagaaaacgcgtttgaaggttggaattttatgctgaaaatttgcctacgggt |
2746232 |
T |
|
| Q |
483 |
ttgatgtggatttttccgaaataagctacaatgtgaattcaaattgg |
529 |
Q |
| |
|
||| ||||||| |||||||||||||| || ||||||| ||||||| |
|
|
| T |
2746233 |
ttggcttggatttgtccgaaataagctaaaacgtgaatttaaattgg |
2746279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 2745794 - 2745920
Alignment:
| Q |
4 |
ttatttcaaacaaggtgagaattctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaag-ttaatgggtatgtgaattgtgtgaga |
101 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||||| || |
|
|
| T |
2745794 |
ttattttaaacaaggtgagaatcctaaatttaagcttgaatt-gaattgttatagattgaattgttgattaagctttatgggtatgtgatttgtgtgtga |
2745892 |
T |
|
| Q |
102 |
aagtttgaatttctatgacaattttcat |
129 |
Q |
| |
|
||| | | |||||||||| || |||||| |
|
|
| T |
2745893 |
aagataggatttctatgataactttcat |
2745920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 528
Target Start/End: Complemental strand, 5836329 - 5836156
Alignment:
| Q |
357 |
ttgaagtttcggattctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttgga |
456 |
Q |
| |
|
||||| ||| ||| |||||||||| |||||||||||||| ||||||| |||| ||| |||||||| ||||||| | ||||||| | ||| |||||||| |
|
|
| T |
5836329 |
ttgaatttttggactctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaacgcgtttgaagtttgg- |
5836231 |
T |
|
| Q |
457 |
aattcatgctgaaaa---tggctacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattg |
528 |
Q |
| |
|
| || |||||||||| || ||||||||||| ||||||||| | ||||||||| || ||||||| |||||| |
|
|
| T |
5836230 |
attttatgctgaaaaaattgcctacgggtttggccaggatttttctgtaataagctaaaacgtgaatttaaattg |
5836156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 5940089 - 5940020
Alignment:
| Q |
371 |
tctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaac |
440 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||| ||| |||||||| ||||||| | ||||||| |
|
|
| T |
5940089 |
tctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaac |
5940020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 5576442 - 5577009
Alignment:
| Q |
1 |
agtttatttcaaacaaggtgagaattctaaattaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576442 |
agtttatttcaaacaaggtgagaatcctaaattaagcttgaatttga---------------attgttgattaagttaatgggtatgtgaattgtgtgag |
5576526 |
T |
|
| Q |
101 |
aaagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
5576527 |
aaaatttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgttgaagatcattgttaatggattgt |
5576626 |
T |
|
| Q |
201 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaatttgtatggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5576627 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaacgcgattgtacttcaaccttatgaaaattgggtaaaaatttgtatggc |
5576726 |
T |
|
| Q |
301 |
atgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576727 |
atgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagtttgaat-- |
5576824 |
T |
|
| Q |
401 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggctacgggtttgatgtggatttttccg |
500 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576825 |
--actttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttggaaattcatgctgaaaatggctacgggtttgatgtggatttttccg |
5576922 |
T |
|
| Q |
501 |
aaataagctacaatgtgaattcaaattggttataaatgatttcaggttaattatagatgcacttatggttgagcatgaagttggttg |
587 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
5576923 |
aaataagctacattgtgaattcaaattggttataaatgatttcaggttaattatggatgcccttatggttgagcgtgaagttggttg |
5577009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 2 - 520
Target Start/End: Complemental strand, 1507404 - 1506884
Alignment:
| Q |
2 |
gtttatttcaaacaaggtgagaattctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
100 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507404 |
gtttattttaaacaagttgagaatcctaaatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
1507305 |
T |
|
| Q |
101 |
aaagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
1507304 |
aaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggtttgt |
1507205 |
T |
|
| Q |
201 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaatttgtatggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507204 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtactagaaccttatgaaaattgggtaaaaatttgtatggc |
1507105 |
T |
|
| Q |
301 |
atgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
400 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
1507104 |
atattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatat |
1507005 |
T |
|
| Q |
401 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggc-tacgggtttgatgtggatttttcc |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| | | ||| ||||||| || |||||||| |
|
|
| T |
1507004 |
aaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttactggtttgacgtagatttttct |
1506905 |
T |
|
| Q |
500 |
gaaataagctacaatgtgaat |
520 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
1506904 |
gaaataagctaaaacgtgaat |
1506884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 331 - 575
Target Start/End: Complemental strand, 24627838 - 24627592
Alignment:
| Q |
331 |
ctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatgga |
430 |
Q |
| |
|
||||||||||||||||| ||| || | |||||||||||||||||||||| ||||||| |||||| |||||| |||| ||| |||||||| |||| | |
|
|
| T |
24627838 |
ctgtgtaatctggaatttagtgattatcgaagtttcggattctacacttaattccctttagtttggatataatttttgtatgtttcggattaggaataaa |
24627739 |
T |
|
| Q |
431 |
ctcagaaaacacatttaaagtttggaaattcatgc-tgaaaatggctacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattgg |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| | ||||||||||| ||||||||||| |||||||| || ||||||| || ||| |
|
|
| T |
24627738 |
ttcagaaaacacatttaaagtttggaaatttatgcttgaaattacttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatgg |
24627639 |
T |
|
| Q |
530 |
ttataaatgatttcagg-ttaattatagatgcacttatggttgagca |
575 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| | ||||||||||| |
|
|
| T |
24627638 |
ttataaatgattccaggattgattatggatgcccacatggttgagca |
24627592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 2522312 - 2522371
Alignment:
| Q |
219 |
gagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaa |
278 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
2522312 |
gagttgctgatcaaaatggattattactgttaaaagtgattgtacttgaactttatgaaa |
2522371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 14191521 - 14191461
Alignment:
| Q |
330 |
tctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttca |
390 |
Q |
| |
|
||||||||| ||| |||| |||| |||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
14191521 |
tctgtgtaacctgaaattgagtaattgttgaagttttggattgtacactcaattcccttca |
14191461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 2 - 520
Target Start/End: Original strand, 5129812 - 5130332
Alignment:
| Q |
2 |
gtttatttcaaacaaggtgagaattctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5129812 |
gtttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
5129911 |
T |
|
| Q |
101 |
aaagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
5129912 |
aaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggtttgt |
5130011 |
T |
|
| Q |
201 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaatttgtatggc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5130012 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaattttgtatggc |
5130111 |
T |
|
| Q |
301 |
atgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
400 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
5130112 |
atattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatat |
5130211 |
T |
|
| Q |
401 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggc-tacgggtttgatgtggatttttcc |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| | |||||||| | | ||||||||||| | ||||||||| |
|
|
| T |
5130212 |
aaactttgcatgattcggattaagaatggactcagagaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttcc |
5130311 |
T |
|
| Q |
500 |
gaaataagctacaatgtgaat |
520 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
5130312 |
gaaataagctaaaacgtgaat |
5130332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 3 - 510
Target Start/End: Original strand, 26619215 - 26619725
Alignment:
| Q |
3 |
tttatttcaaacaaggtgagaattctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
101 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619215 |
tttattttaaacaaggtgagaatcctatatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
26619314 |
T |
|
| Q |
102 |
aagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgtt |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
26619315 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggtttgtt |
26619414 |
T |
|
| Q |
202 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaatttgtatggca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26619415 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaatggtgattgtacttgaacattatgaaaattgggtaaaaatttgtatggca |
26619514 |
T |
|
| Q |
302 |
tgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatata |
401 |
Q |
| |
|
| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
26619515 |
tattggtattatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtctcggattctacacttatttcccttcagttcggatata |
26619614 |
T |
|
| Q |
402 |
aactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggc-tacgggtttgatgtgga-tttttcc |
499 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| | | ||||||||||| | || ||||||| |
|
|
| T |
26619615 |
aactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgagatagattttttcc |
26619714 |
T |
|
| Q |
500 |
gaaataagcta |
510 |
Q |
| |
|
||||||||||| |
|
|
| T |
26619715 |
gaaataagcta |
26619725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 3 - 510
Target Start/End: Original strand, 26725128 - 26725638
Alignment:
| Q |
3 |
tttatttcaaacaaggtgagaattctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
101 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26725128 |
tttattttaaacaaggtgagaatcctatatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
26725227 |
T |
|
| Q |
102 |
aagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgtt |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
26725228 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggtttgtt |
26725327 |
T |
|
| Q |
202 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaatttgtatggca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26725328 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaatggtgattgtacttgaacattatgaaaattgggtaaaaatttgtatggca |
26725427 |
T |
|
| Q |
302 |
tgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatata |
401 |
Q |
| |
|
| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
26725428 |
tattggtattatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtctcggattctacacttatttcccttcagttcggatata |
26725527 |
T |
|
| Q |
402 |
aactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggc-tacgggtttgatgtgga-tttttcc |
499 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| | | ||||||||||| | || ||||||| |
|
|
| T |
26725528 |
aactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgagatagattttttcc |
26725627 |
T |
|
| Q |
500 |
gaaataagcta |
510 |
Q |
| |
|
||||||||||| |
|
|
| T |
26725628 |
gaaataagcta |
26725638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 487 - 587
Target Start/End: Original strand, 34254856 - 34254956
Alignment:
| Q |
487 |
tgtggatttttccgaaataagctacaatgtgaattcaaattggttataaatgatttcaggttaattatagatgcacttatggttgagcatgaagttggtt |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34254856 |
tgtggatttttccgaaataagctacaatgtgaattcaaattggttataaatgatttcaggttaattatagatgcacttatggttgagcatgaagttggtt |
34254955 |
T |
|
| Q |
587 |
g |
587 |
Q |
| |
|
| |
|
|
| T |
34254956 |
g |
34254956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 529
Target Start/End: Original strand, 68715 - 69234
Alignment:
| Q |
4 |
ttatttcaaacaaggtgagaattctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaag-ttaatgggtatgtgaattgtgtgaga |
101 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
68715 |
ttattttaaacaaggtgaaaatcctaaatttaagcttgaatt-gaattgttatagattgaattgttgattaagctttatgggtatgtgaattgtgtga-- |
68811 |
T |
|
| Q |
102 |
aagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgtcgaagatcattgttaatgggttgtt |
201 |
Q |
| |
|
||| | | |||||||||| || |||||| ||| | ||| ||||||||||||| | | ||||||||||||| |||| || |||||||||| |||| || || |
|
|
| T |
68812 |
aagataggatttctatgataactttcatgttagaatagattggttcatgaaagggggtaattagagaattgttgttgatgatcattgttgatggtttatt |
68911 |
T |
|
| Q |
202 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaaattt-gtatggc |
300 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
68912 |
--------aagtaagatgagttggtgatcaaaatgtagtattattgttaaaagtgactgtacttgaaccttatgaaaattgggtaaaaacttcgtatggc |
69003 |
T |
|
| Q |
301 |
atgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
400 |
Q |
| |
|
|| || |||||||||||||||||| | || ||||| ||||||||||||||| || | | |||||| ||||||||||||| ||| |||||||||| |||| |
|
|
| T |
69004 |
atatttgtagtatattcatcatatatattgttgtgttatctggaattaagtaattatcggagtttcagattctacacttaattcacttcagtttggatat |
69103 |
T |
|
| Q |
401 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaa--tggctacgggtttgatgtggatttttc |
498 |
Q |
| |
|
||| |||| ||| | |||||| ||||||| ||||||||| | ||| ||| |||||| || |||||||||| || ||||||||||| ||||||| || |
|
|
| T |
69104 |
aaattttgtatgttttggattaggaatggattcagaaaacgcgtttgaaggttggaattttatgctgaaaatttgcctacgggtttggcttggatttgtc |
69203 |
T |
|
| Q |
499 |
cgaaataagctacaatgtgaattcaaattgg |
529 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |
|
|
| T |
69204 |
cgaaataagctaaaacgtgaatttaaattgg |
69234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 331 - 586
Target Start/End: Original strand, 20809614 - 20809864
Alignment:
| Q |
331 |
ctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatgga |
430 |
Q |
| |
|
|||||||| | |||||| |||| || ||| ||||||| |||| || ||||||||||| || ||||||| |||| ||| || ||||||||| ||| |
|
|
| T |
20809614 |
ctgtgtaaccaggaattgagtaattattggagtttcgaattccacgcttatttccctc-----tggatataaattttgtatgtttcagattaagaacgga |
20809708 |
T |
|
| Q |
431 |
ctcagaaaacacatttaaagtttggaaattcatgctgaaaatggctacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattggt |
530 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20809709 |
ttcagaaaacgcatttaaagtttggaaattcatactgcaaatggctacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattggt |
20809808 |
T |
|
| Q |
531 |
tataaatgatttcaggttaattatagatgcacttatggttgagcatgaagttggtt |
586 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||||||| ||||||||||| |
|
|
| T |
20809809 |
tataaatgatttcaggttaattacggatgccctcatggttgagtgtgaagttggtt |
20809864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 25337115 - 25337030
Alignment:
| Q |
371 |
tctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttgga |
456 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||| ||| |||||||| ||||||| | ||||||| | ||| ||||||||| |
|
|
| T |
25337115 |
tctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaacgcgtttgaagtttgga |
25337030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 510
Target Start/End: Complemental strand, 20112630 - 20112462
Alignment:
| Q |
342 |
ggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaaca |
441 |
Q |
| |
|
|||||| |||| || ||| | |||| ||||||||||||| || |||| |||| | ||||||| |||| |||| |||||||| ||| || ||||||||| |
|
|
| T |
20112630 |
ggaattgagtaattattggattttcagattctacacttaatttcctt-agttgggatataaattttgtatgattcggattagaaatagattcagaaaacg |
20112532 |
T |
|
| Q |
442 |
catttaaagtttggaaattcatgctgaaaa-tggctacgggtttgatgtggatttttccgaaataagcta |
510 |
Q |
| |
|
| ||||||||||||| || ||||||||| || |||||||||| |||||||||||| ||||||||| |
|
|
| T |
20112531 |
cgtttaaagtttggattttggtgctgaaaactgcttacgggtttggcatggatttttccggaataagcta |
20112462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 541
Target Start/End: Original strand, 3811481 - 3811561
Alignment:
| Q |
462 |
atgctgaaaatggct-acgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattggttataaatgatt |
541 |
Q |
| |
|
||||||||||||||| ||| |||||| |||| |||| |||||||||||| || | || || || |||||||||||||||| |
|
|
| T |
3811481 |
atgctgaaaatggcttacgagtttgacatggactttttcgaaataagctaaaacgagattttaagttggttataaatgatt |
3811561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 529
Target Start/End: Complemental strand, 9392748 - 9392585
Alignment:
| Q |
367 |
ggattctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgct |
466 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||| |||| ||| ||||||| ||||||| ||| ||||| ||| ||||| || | || ||||| |
|
|
| T |
9392748 |
ggattctacacttaattcccttcagtttaaatacaaattttgtatgtttcggatttggaatggattcacaaaacgtgtttcaagttagg-attttatgct |
9392650 |
T |
|
| Q |
467 |
gaaaa--tggctacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattgg |
529 |
Q |
| |
|
||||| || ||||||||| | ||||||||| |||||||||||| || ||||||| ||||||| |
|
|
| T |
9392649 |
gaaaatttgcctacgggttcggcttggattttttcgaaataagctaaaacgtgaatttaaattgg |
9392585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 23307261 - 23307359
Alignment:
| Q |
320 |
catatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatataaactttgcatgactcgg |
418 |
Q |
| |
|
||||||| ||||||||||| | |||||| ||| |||||| | ||| |||||||| ||||||| ||||||||||| | | |||||||| |||| |||| |
|
|
| T |
23307261 |
catatctttttctgtgtaaccaggaattgtgtaattgttggaattttggattctatgcttatttaccttcagtttggacacaaactttgtatgattcgg |
23307359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 587
Target Start/End: Original strand, 26166 - 26209
Alignment:
| Q |
544 |
aggttaattatagatgcacttatggttgagcatgaagttggttg |
587 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
26166 |
aggttaattatagatgcccttatggttgagcatgaaattggttg |
26209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 587
Target Start/End: Complemental strand, 19803774 - 19803731
Alignment:
| Q |
544 |
aggttaattatagatgcacttatggttgagcatgaagttggttg |
587 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
19803774 |
aggttaattataaatgcccttatggttgagcatgaagttggttg |
19803731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University