View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_high_7 (Length: 531)
Name: NF5589_high_7
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 38119208 - 38118696
Alignment:
| Q |
1 |
tttgccacaacccatgatggatgaaggtagcttaccaaccctttcaattccttcttcaaaaaccactcccattcccatatagaaatgagactctatatga |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38119208 |
tttgccacaacccatgatggatgaaggtagcttcccaaccctttcaattccttcttcaaaaaccactcccattcccatatagaaatgagactctatatga |
38119109 |
T |
|
| Q |
101 |
caatggaaagcccacacaccaggattatctgatcgaaacctcaaagcagtccaaccaaatgagtgcactggcacagtattcttcataatggggttcacca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38119108 |
caatggaaagcccagacaccaggattatctgatcgaaacctcaaagcagtccaaccaaatgagtgcactggcacagtattcttcataatggggttcacca |
38119009 |
T |
|
| Q |
201 |
aattataattttttgggtctttgttcgcatcaaactttccctttccatatccaagtacccaaaaatcatgtccatgaagatgccaaggatgtgtctcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38119008 |
aattataattttttgggtctttgttcgcatcaaactttccctttccatatccaagtacccaaaaatcatgtccatgaagatgccaaggatgtgtctcact |
38118909 |
T |
|
| Q |
301 |
attatttttattcatagtgtttgcattttgaagtataatatccacagttgtattgaacttcagtctataaattccattgctagaagtagcatttgtgttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118908 |
gttatttttattcatagtgtttgcattttgaagtataatatccacagttgtattgaacttcagtctataaattccattgctagaagtagcatttgtgttg |
38118809 |
T |
|
| Q |
401 |
ttagccacgctgaaaatatcataattattaaaatcatagccatcaggtggaggtgtttggttgaattcaccagttatattctctttaagtgcaacaagat |
500 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118808 |
ttagccacactgaaaatatcataattattaaaatcatagccatcaggtggaggtgtttggttgaattcaccagttatattctctttaagtgcaacaagat |
38118709 |
T |
|
| Q |
501 |
aaggggtgtgagg |
513 |
Q |
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||||||||||||| |
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| T |
38118708 |
aaggggtgtgagg |
38118696 |
T |
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