View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_1 (Length: 876)
Name: NF5589_low_1
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 827; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 13 - 858
Target Start/End: Complemental strand, 37101 - 36255
Alignment:
| Q |
13 |
catcaaaaccgattttagcgaaaacttcccactacagtagtaaagcaggtcatcgagactcgggcccataagttcaagaactagaacattatagtctccg |
112 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37101 |
catcaaaaccgattttagcgaaaacttcccactgcagtagtaaagcaggtcatcgagactcgggcccataagttcaagaactagaacattatagtctccg |
37002 |
T |
|
| Q |
113 |
tcagtaccaaaccatttcattcttggaataccaccttaaattccattactataataaattagaaaggactgagaaaacaaagggaaaa-tattgtgaggg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37001 |
tcagtaccaaaccatttcattcttggaataccaccttaaattccattactataataaattagaaaggactgagaaaacaaagggaaaaatattgtgaggg |
36902 |
T |
|
| Q |
212 |
aaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagtagctgtggttgttga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901 |
aaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagtagctgtggttgttga |
36802 |
T |
|
| Q |
312 |
gttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaaagatgtaaattaaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36801 |
gttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaaagatgtaaattaaca |
36702 |
T |
|
| Q |
412 |
atcaaaatttaaacatgcatctaattgagaaatttgattcactacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36701 |
atcaaaatttaaacatgcatctaattgagaaatttgatccactacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactac |
36602 |
T |
|
| Q |
512 |
ggaaaagataaaaacgatgtaatcaaatttaaggtctttaatttaactctctcattgatcatcactattattaccttaaatgcgactaaaatgtgtccga |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601 |
ggaaaagataaaaacgatgtaatcaaatttaaggtctttaatttaactctctcattgatcatcactattattaccttaaatgcgactaaaatgtgtccga |
36502 |
T |
|
| Q |
612 |
gagtatccaagatatatataaaagcaaagaaaactaagtttctttgagacacttgtctaagttgtcagacatgtgttacacaggtgtcatacgagtgtcg |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36501 |
gagtatccaagatatatataaaagcaaagaaaactaagtttctttgagacacttgtctaagttgtcagacatgtgttacacaggtgtcatacgagtgtcg |
36402 |
T |
|
| Q |
712 |
tacaactaagatacgcctattctcaggacgcctaatcccaggagtatttgtaattatttaaaatgcaataacaaactcaaaatgatcacttcctaatcac |
811 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36401 |
tacaactaagatacgcctattctcaggacgcctaatcccaagagtatttgtaattatttaaaatgcaataacaaactcaaaatgatcacttcctaatcac |
36302 |
T |
|
| Q |
812 |
aattattacaacaaataaagaaaataaaaaggaaaattctaagcaat |
858 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36301 |
aattattacaacaaataaagaaaataaaaaggaaaattctaagcaat |
36255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 39595881 - 39595813
Alignment:
| Q |
469 |
acaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaa |
537 |
Q |
| |
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||||||||| ||||||||| | |||||||||||||| |||||| ||||| || ||| ||||||||||| |
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| T |
39595881 |
acaagatattatagtcttttaccttcatccatccatatactaccaaaaagctagaaatgatgtaatcaa |
39595813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 37268049 - 37267953
Alignment:
| Q |
452 |
actacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtct |
548 |
Q |
| |
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|||| |||| || ||| ||||||||||||||||||| | |||||| |||| ||||||||| ||||| |||||| ||||||||||||||| |||| |
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| T |
37268049 |
actaaaaaagttctaaaacaagatatgatagtcttttaccttcattcatctatctactacctaaaagtaaaaaacattgtaatcaaatttaatgtct |
37267953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 474 - 553
Target Start/End: Original strand, 10408238 - 10408317
Alignment:
| Q |
474 |
atatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctttaat |
553 |
Q |
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| T |
10408238 |
atatgatagccgttcaccttcatcgatccatctactactaaaaagctaaaactgatgtaatcaaatttaatgtctttaat |
10408317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 458 - 549
Target Start/End: Original strand, 13085098 - 13085188
Alignment:
| Q |
458 |
aaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctt |
549 |
Q |
| |
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|||||| ||| ||||| ||||||||| ||||| |||||| | || |||||| || |||||| |||||| ||||||||||||||||| ||||| |
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| T |
13085098 |
aaaattctaaaacaaggtatgatagtttttaa-cttcattcttctatctaccaccgaaaagctaaaaatgatgtaatcaaatttaatgtctt |
13085188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 552
Target Start/End: Original strand, 43222529 - 43222614
Alignment:
| Q |
469 |
acaagatatgatagtctttaagcttcatccatccatctacta--cggaaaagataaaaacgatgtaatcaaatttaaggtctttaa |
552 |
Q |
| |
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|||| |||| ||||| ||| | |||||| ||||||||||||| | || ||| |||||| ||||||||||||||||| |||||||| |
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| T |
43222529 |
acaaaatattatagtttttcatcttcattcatccatctactataccgataagctaaaaatgatgtaatcaaatttaatgtctttaa |
43222614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 531
Target Start/End: Complemental strand, 43416953 - 43416879
Alignment:
| Q |
457 |
aaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgt |
531 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | |||| | |||| |||||||| |||||||||||| ||||| |
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| T |
43416953 |
aaaaattctaaaacaagatatgatagtctttcatcttcgttcatctatctactatcaaaaagataaaaatgatgt |
43416879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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