View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_13 (Length: 458)
Name: NF5589_low_13
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 2816658 - 2817086
Alignment:
| Q |
18 |
cagcccgcatatctacaaagtgtccagagtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcctgtgttatgtt |
117 |
Q |
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| T |
2816658 |
cagcccgcatatctacaaagtgtccagagtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcccgtgttatgtt |
2816757 |
T |
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| Q |
118 |
atgaggaaacagaacatgcgtgttctattatgttcaaggtgtatctggtcgtaactcccaaacttgagtgatcaggagttggaagttaacttctaaacag |
217 |
Q |
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| T |
2816758 |
atggggaaatagaacatgcatgttctattatgttcaaggcgtatctggtcgtaactcccaaacttgagcgatcaggagttggaagttaacttctaaacag |
2816857 |
T |
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| Q |
218 |
ttccagagttacgaaccatgaagggtatatttgactgtttgaggggtctgtaagcaattcaaggagcctattgagcaattttcaaatagtgatagcataa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2816858 |
ttccagagttacgaaccatgaagggtatatttgactgtttgaggggtctgtaagcaattcaaggagcctattgagcaattttctaatagtgatagcataa |
2816957 |
T |
|
| Q |
318 |
nnnnnnnnnnnnnnnnacgttcatgttcttagatgtaccatataatataattgagagtgtatacctaatttttctcgttcaggaagattgtataataaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2816958 |
tttttttattttttttacgttcatgttcttagatgtaccatataatataattgagagtgtatacataatttttctcgttcaggaagattgtataataaat |
2817057 |
T |
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| Q |
418 |
ttcaagttgtattgtaaattctgaagtat |
446 |
Q |
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| T |
2817058 |
ttcaagttgtattgtaaattctgaagtat |
2817086 |
T |
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