View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_15 (Length: 440)
Name: NF5589_low_15
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 29754420 - 29754233
Alignment:
| Q |
19 |
caaaaggcacgctaattaatttttgtcaacacacgcgcttgtgattcttctctcagcctccatacacatcgcctgcctctacatcttcttcactctcaat |
118 |
Q |
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| T |
29754420 |
caaaaggcacgctaattaatttttgtcaacacacgcgcttgtgattcttctcttggcctccatacacatcgcctgcctctacatcttcttcactctcaat |
29754321 |
T |
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| Q |
119 |
gttaatatgcag-annnnnnngaaggaatcgaagtataatgaaaggctgaaaacttgagtaaaaaaattgattcgattcctttcttat |
205 |
Q |
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| T |
29754320 |
gttaatatgcagaatttttttgaaggaatcgaagtataatgaaaggctgaaaacttgagtaaaaaatttgattcgattcctttcttat |
29754233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 29754162 - 29754028
Alignment:
| Q |
274 |
gcacataatacaaattgattcacaatattataaaagaattataactataaagtagaaaaactttcaataaaaattgatgcaaaatactttaatttcaatt |
373 |
Q |
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| T |
29754162 |
gcacctaatacaaattgattcacaatcttataaaagatttataactataaagtcgacaacctttcaatcaaaattgatgcaaaattcttcaatttcaatt |
29754063 |
T |
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| Q |
374 |
tctctgaaattcatctgaatggagaaagcacttat |
408 |
Q |
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| T |
29754062 |
tctctgaaattcatctgaatggagaaggctcttat |
29754028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 408
Target Start/End: Original strand, 28720092 - 28720221
Alignment:
| Q |
281 |
atacaaattgattcacaatattataaaaga--attataactataaagtagaaaaactttcaataaaaattgatgcaaaatactttaatttcaatttctct |
378 |
Q |
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| T |
28720092 |
atacaaattgattcgcaatcctataaaatactcttataactagaaagtcaacaatctttcaatcaaaattgatacaaaattcttcaatttcaattcctgt |
28720191 |
T |
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| Q |
379 |
gaaattcatctgaatggagaaagcacttat |
408 |
Q |
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| T |
28720192 |
gaaattcatttgaagggagaaggctcttat |
28720221 |
T |
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