View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_16 (Length: 418)
Name: NF5589_low_16
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 189 - 411
Target Start/End: Original strand, 42636603 - 42636825
Alignment:
| Q |
189 |
atttctaagcaacttaatagtatatttgggttagccaataatctccaataacctataaaagtaattatttctatccgcactccatgattttcagtaacag |
288 |
Q |
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| T |
42636603 |
atttctaagcaacttaatagtatatttgggttagccaataatctccaataacctataaaagtaattatttctatccgcactccatgattttcagtaacag |
42636702 |
T |
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| Q |
289 |
tcttgcgcgacatgatgcgtcttaagcagtgacgagacactttcaactcttcacaattgcgtgacacgtggattgtagcacgcatcgtgcatgtactagt |
388 |
Q |
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| T |
42636703 |
tcttgcgcgatgtgatgcgtcttaagcagtgacgagacactttcaactcttcacaattgcatgacatgtggattgtagcacgcatcgtgcatgtactagt |
42636802 |
T |
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| Q |
389 |
agtggatccttttgatattcttc |
411 |
Q |
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| T |
42636803 |
agtggatccttttgattttcttc |
42636825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 42636114 - 42636276
Alignment:
| Q |
26 |
agtatatttggagatacaatgctatgcatgtgatcataaaggtgcaacatgatacacagtgcatgggtgatgcatgtatcaatcactaatcaaaagaaca |
125 |
Q |
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| T |
42636114 |
agtatatttggagatacaatgctatgcatgtgatcataaaggtacaacatgatacacagtgcatgggtgatgcatgtatcaatcactaatcaaaagaaca |
42636213 |
T |
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| Q |
126 |
ctaatcattttaccttgtgttgtttgtctcttgtatttatactttataggtatgtgtgactta |
188 |
Q |
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| T |
42636214 |
ctaatcattttaccttgtgttgtttgtctcttgtatttatactttataggtatgtgtgactta |
42636276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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