View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_19 (Length: 403)
Name: NF5589_low_19
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 52985728 - 52986095
Alignment:
| Q |
17 |
aatatcctactattaattaatacacatataaagatcttcttacggtgtcagttttaatttttcaaaaacaacggcaactctcagcatagaaagccttgtt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985728 |
aatatcctactattaattaatacacatataaagatcttcttacggtgtcagttttaatttttcaaaaacaacggcaactctcagcatagaaagccttgtt |
52985827 |
T |
|
| Q |
117 |
tgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcccgca |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985828 |
tgatcattgaactgggatagcaatgggatcaaggcaccatgactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcccgca |
52985927 |
T |
|
| Q |
217 |
cagcctacaatttcagagttatggtgttcagcnnnnnnnntcccagttctactgctattacattttactcccttcaaggttttttccacacaaattaaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985928 |
cagcctacaatttcagagttatggtgttcagcaaaaaaaatcccagttctactgctattacattttactcccttcaaggttttttccacacaaattaaga |
52986027 |
T |
|
| Q |
317 |
aatgcaatggtgctgtcaaaaaacattacccatttaccaaactaaccttattcactattggtgtattt |
384 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
52986028 |
aatgcaacggtgctgtcaaaaaacattacccatttaccaaactaaccttattcgctattggtgtattt |
52986095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 55635392 - 55635245
Alignment:
| Q |
89 |
ggcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaa |
188 |
Q |
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||||| |||||||||||||||||||| ||| ||||| ||||||||||||| ||| |||| |||||||| ||||| |||||||||||||||| |||||| |
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| T |
55635392 |
ggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcagggcaccatgactgagaacaagatcacggcaccaaggggac |
55635293 |
T |
|
| Q |
189 |
tcaacggcaacgtttcctaatgcccgcacagcctacaatttcagagtt |
236 |
Q |
| |
|
||| ||||||||||||| ||||||| | |||||||||||||||||||| |
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|
| T |
55635292 |
tcaccggcaacgtttcccaatgcccacgcagcctacaatttcagagtt |
55635245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 55665559 - 55665699
Alignment:
| Q |
89 |
ggcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaa |
188 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||| ||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
55665559 |
ggcaactctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagcgcaccatgactgaaaacaagatcacggcacctaggggaa |
55665658 |
T |
|
| Q |
189 |
tcaacggcaacgtttcctaatgcccgcacagcctacaattt |
229 |
Q |
| |
|
||| |||||| |||||| ||||||| |||||||| |||||| |
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|
| T |
55665659 |
tcaccggcaatgtttcccaatgcccacacagcctgcaattt |
55665699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 55659348 - 55659494
Alignment:
| Q |
90 |
gcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaat |
189 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| ||||| ||||||||||||| |||||||| ||||||| ||||| |||||||||||| || ||||||||| |
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|
| T |
55659348 |
gcaattctcagcatagaaagctttgcttgctcattcaactgggataacagcgggatcaacgcaccatgactgagaacaagatcacgacaactaggggaat |
55659447 |
T |
|
| Q |
190 |
caacggcaacgtttcctaatgcccgcacagcctacaatttcagagtt |
236 |
Q |
| |
|
|| ||||||| ||||| |||| || | |||||||||||||||||||| |
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|
| T |
55659448 |
caccggcaacatttcccaatgtccacgcagcctacaatttcagagtt |
55659494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 54862191 - 54862310
Alignment:
| Q |
113 |
tgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcc |
212 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||| |||||||| ||||| |||||||||||| ||| ||||||||||| | |||| |||||| |||||| |
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|
| T |
54862191 |
tgtttggtcattcaactgggataacagcgggatcagggcaccatgactgagaacaagatcacgacacctaggggaatcaccagcaatgtttcccaatgcc |
54862290 |
T |
|
| Q |
213 |
cgcacagcctacaatttcag |
232 |
Q |
| |
|
| | ||||||||| ||||| |
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|
| T |
54862291 |
cacggagcctacaaattcag |
54862310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 244
Target Start/End: Complemental strand, 54627177 - 54627019
Alignment:
| Q |
86 |
aacggcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggg |
185 |
Q |
| |
|
||||||| ||||||| || |||||| | ||| ||||| | ||||||||| | | |||||| |||||| | ||||| |||||||||||||| ||||| |
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|
| T |
54627177 |
aacggcatttctcagcctataaagcccttcttgctcattcagctgggataaaagtaggatcagggcaccgtgactgagaacaagatcacggcctctaggg |
54627078 |
T |
|
| Q |
186 |
gaatcaacggcaacgtttcctaatgcccgcacagcctacaatttcagagttatggtgtt |
244 |
Q |
| |
|
|||||| | |||| |||||| ||||||| | |||||||||||||||||||| ||||||| |
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|
| T |
54627077 |
gaatcaccagcaatgtttcccaatgcccacgcagcctacaatttcagagttttggtgtt |
54627019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 3671912 - 3672027
Alignment:
| Q |
90 |
gcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaat |
189 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| || |||||||||| ||||||| |||||||| ||||| ||||||||||||||| ||||||||| |
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|
| T |
3671912 |
gcaactctcagcatagaaatatctgtaagctcattcaagtgggataacagcgggatcatggcaccatgactgagaacaagatcacggcaactaggggaat |
3672011 |
T |
|
| Q |
190 |
caacggcaacgtttcc |
205 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
3672012 |
cacaggcaacgtttcc |
3672027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 9889646 - 9889518
Alignment:
| Q |
120 |
tcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcccgcacag |
219 |
Q |
| |
|
||||| || |||||||||| ||||||| |||||||| ||||| |||||||| |||||| ||||||||||| |||||||||||| || |||| | || |
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|
| T |
9889646 |
tcattcaagtgggataacagcgggatcatggcaccatgactgagaacaagataacggcaactaggggaatcacaggcaacgtttcccaacgcccacgaag |
9889547 |
T |
|
| Q |
220 |
cctacaatttcagagttatggtgttcagc |
248 |
Q |
| |
|
||||||||||||||||| | ||||||||| |
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|
| T |
9889546 |
cctacaatttcagagttttagtgttcagc |
9889518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 9420024 - 9420108
Alignment:
| Q |
300 |
ttccacacaaattaagaaatgcaatggtgctgtcaaaaaacattacccatttaccaaactaaccttattcactattggtgtattt |
384 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||| | |||||| || | ||||| ||| || |||| || |||||||||| |||| |
|
|
| T |
9420024 |
ttccacacatattaagaaatgcaatagtgttgtctataaacatgacacttttactaaaatagccttgttaactattggtgcattt |
9420108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 13401564 - 13401423
Alignment:
| Q |
95 |
tctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacg |
194 |
Q |
| |
|
||||||||| |||||| ||| || ||||| ||||||| ||||| ||||||| |||||||| || | ||||||||| |||||| |||| |||||| | |
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|
| T |
13401564 |
tctcagcattgaaagctttgcctgctcattcaactgggttaacagcgggatcagggcaccatggctaagaacaagatcgcggcacctaggtgaatcacca |
13401465 |
T |
|
| Q |
195 |
gcaacgtttcctaatgcccgcacagcctacaatttcagagtt |
236 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
13401464 |
gcaacatttcccaatgcccacacagcctacaattacagagtt |
13401423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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