View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_20 (Length: 400)
Name: NF5589_low_20
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_20 |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 11177266 - 11177497
Alignment:
| Q |
64 |
caagaaacataactgcaattgaaatcgaaca-------ccaaacagtagcgcaaacaacgaaaatatatggattatatggcacacgtactcagcaataac |
156 |
Q |
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| T |
11177266 |
caagaaacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
11177365 |
T |
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| Q |
157 |
aattgttatatgctcagccccgcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggat |
256 |
Q |
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| T |
11177366 |
aattgttatatactcagcccagcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggat |
11177465 |
T |
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| Q |
257 |
tggtaagtgctgcaaaataaaatcgggttgag |
288 |
Q |
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| T |
11177466 |
tggtaagtgctgcaaaataaaatcgggttgag |
11177497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 391
Target Start/End: Original strand, 11177567 - 11177600
Alignment:
| Q |
358 |
tggattgctgaacgaaaatagaacacaggttctg |
391 |
Q |
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| T |
11177567 |
tggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 16766 - 16469
Alignment:
| Q |
19 |
accaatatgctttaaaat---caagtcacgacaatgggcataatactccaagaaacataactgcaattgaaatcgaacaccaaaca-------gtagcgc |
108 |
Q |
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| T |
16766 |
accaatatgctttaaaacaaccaagtcacgacaatgggcataatactccaagaaacataactgcaattggaatcgaacaccaaacaccaaacagtagcgc |
16667 |
T |
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| Q |
109 |
aaacaacgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaa------------------caattc |
190 |
Q |
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| T |
16666 |
aaacaatgaaaatatatggattatatggcacacgtactcaacaataacaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattc |
16567 |
T |
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| Q |
191 |
aatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgag |
288 |
Q |
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| T |
16566 |
aatttaattaaataaaagaaagaaaagggacgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgag |
16469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 16399 - 16366
Alignment:
| Q |
358 |
tggattgctgaacgaaaatagaacacaggttctg |
391 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16399 |
tggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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