View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_21 (Length: 375)
Name: NF5589_low_21
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_21 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 183 - 375
Target Start/End: Complemental strand, 1328914 - 1328724
Alignment:
| Q |
183 |
atcaaaataggctaatccattgtcattttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacatcgatgcagg |
282 |
Q |
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| T |
1328914 |
atcaaaacaggctaatccattgtcattt-atccaaattccatataacgagtgactgtatgattgtcaagaataatatgtttatgtaaacatttatgcagg |
1328816 |
T |
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| Q |
283 |
tgaatacaattataccacttattttttctttctgaaatgaggatccacataaaaagcattttatattattagttaacatgtaaaacaacagtt |
375 |
Q |
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| T |
1328815 |
tgaatacaattataccactt-ttttttcttcctgaaatgaggatccacataaaaagcattttatattattagttaacatgtataacaacagtt |
1328724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 1329167 - 1328982
Alignment:
| Q |
1 |
aagagagaatagtatggaaatagaaatggtaaaagactaaagattgaatcatatgctacatgtttctttttcataca--tcataagtcataataaaataa |
98 |
Q |
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| T |
1329167 |
aagagagaagagcgtggaaatagaaatggtaaa-gacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactaa |
1329069 |
T |
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| Q |
99 |
aaaa-tctaacagcatgaaagctttaaacttgggatgcaaatacaactaattcttaattcggccaattggaagaagatttttcttat |
184 |
Q |
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| T |
1329068 |
aaaaatctaacagtatgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttat |
1328982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 44187578 - 44187455
Alignment:
| Q |
183 |
atcaaaataggctaatccattgtcattttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacatcgatgcagg |
282 |
Q |
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| T |
44187578 |
atcaaaacagtctagtccgttgtcattt-atccaaatttcataatatgagtaactatatggttgtcaagaataatatgtttatgtaaaaattgttgcaag |
44187480 |
T |
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| Q |
283 |
tgaatacaattataccacttatttt |
307 |
Q |
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| T |
44187479 |
tgaatacaattataccacttttttt |
44187455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 44187717 - 44187651
Alignment:
| Q |
113 |
tgaaagctttaaacttgggatgcaaatacaactaattcttaattcggccaattggaagaagattttt |
179 |
Q |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttt |
44187651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 19161355 - 19161495
Alignment:
| Q |
210 |
ttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaaca-tcgatgcaggtgaatacaattataccacttattttt |
308 |
Q |
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| T |
19161355 |
ttatccaaattccatatttggagtgactatatcattgtcaagaatattatgttcatgcaaacattggttgcaggtgtattcaagtataccatggattttt |
19161454 |
T |
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| Q |
309 |
tctttctgaaatgaggatccacataaaaagcattttatattat |
351 |
Q |
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| T |
19161455 |
--tttcagaaatgaggattcgcatagaaagcatcttatattat |
19161495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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