View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589_low_22 (Length: 371)

Name: NF5589_low_22
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589_low_22
NF5589_low_22
[»] chr3 (19 HSPs)
chr3 (1-192)||(13085200-13085391)
chr3 (240-363)||(13085066-13085189)
chr3 (239-354)||(17143751-17143866)
chr3 (270-356)||(9801084-9801169)
chr3 (168-356)||(2311834-2312022)
chr3 (268-356)||(21342287-21342375)
chr3 (268-356)||(30606931-30607019)
chr3 (268-356)||(8122915-8123002)
chr3 (268-356)||(16704405-16704493)
chr3 (293-356)||(28715488-28715551)
chr3 (271-345)||(431327-431401)
chr3 (268-346)||(28723784-28723862)
chr3 (271-343)||(12516191-12516263)
chr3 (286-343)||(1770846-1770903)
chr3 (268-356)||(6109653-6109741)
chr3 (270-323)||(21649418-21649471)
chr3 (239-313)||(17485667-17485741)
chr3 (286-318)||(12108440-12108472)
chr3 (275-323)||(21652652-21652700)
[»] chr5 (16 HSPs)
chr5 (268-356)||(22903096-22903184)
chr5 (177-356)||(27083238-27083416)
chr5 (173-356)||(20025191-20025374)
chr5 (271-354)||(26994608-26994691)
chr5 (270-343)||(25537410-25537483)
chr5 (286-357)||(25333756-25333827)
chr5 (286-356)||(32418486-32418556)
chr5 (268-356)||(8938915-8939002)
chr5 (268-316)||(16621211-16621259)
chr5 (279-343)||(24647302-24647366)
chr5 (268-308)||(26348127-26348167)
chr5 (272-343)||(22865768-22865839)
chr5 (289-339)||(19993182-19993232)
chr5 (239-316)||(227718-227795)
chr5 (271-312)||(18799786-18799827)
chr5 (290-356)||(34493542-34493604)
[»] chr2 (20 HSPs)
chr2 (186-356)||(45258152-45258322)
chr2 (186-345)||(27846530-27846689)
chr2 (272-353)||(24499796-24499877)
chr2 (269-356)||(3586367-3586454)
chr2 (268-355)||(45714998-45715085)
chr2 (274-356)||(36267507-36267589)
chr2 (238-347)||(12127672-12127781)
chr2 (268-341)||(15825157-15825230)
chr2 (173-356)||(12168881-12169064)
chr2 (292-356)||(19919066-19919130)
chr2 (268-356)||(20120350-20120438)
chr2 (268-343)||(18770317-18770392)
chr2 (239-343)||(18135845-18135949)
chr2 (239-344)||(10923177-10923282)
chr2 (243-316)||(30638541-30638614)
chr2 (270-346)||(24755473-24755549)
chr2 (285-345)||(18134338-18134400)
chr2 (270-312)||(24157350-24157392)
chr2 (239-300)||(27933800-27933861)
chr2 (270-306)||(29711023-29711059)
[»] chr6 (33 HSPs)
chr6 (267-356)||(19305466-19305555)
chr6 (239-356)||(30680966-30681083)
chr6 (275-356)||(689857-689938)
chr6 (239-356)||(11087476-11087593)
chr6 (272-353)||(18147313-18147394)
chr6 (271-355)||(20148323-20148405)
chr6 (271-355)||(22184423-22184505)
chr6 (292-356)||(3404862-3404926)
chr6 (268-343)||(31295548-31295623)
chr6 (179-338)||(34187213-34187372)
chr6 (271-356)||(9277301-9277385)
chr6 (289-357)||(15480340-15480408)
chr6 (268-343)||(16343582-16343657)
chr6 (270-356)||(9292020-9292105)
chr6 (274-347)||(14268440-14268513)
chr6 (239-343)||(12449596-12449700)
chr6 (268-316)||(19730631-19730679)
chr6 (269-329)||(25008417-25008477)
chr6 (268-343)||(9403175-9403250)
chr6 (268-347)||(14080487-14080565)
chr6 (268-342)||(12424328-12424402)
chr6 (290-356)||(16130993-16131059)
chr6 (271-352)||(10115689-10115770)
chr6 (268-356)||(4251044-4251132)
chr6 (274-314)||(13823419-13823459)
chr6 (268-356)||(22572048-22572135)
chr6 (299-347)||(31423846-31423894)
chr6 (284-356)||(34572994-34573066)
chr6 (291-346)||(17380123-17380178)
chr6 (293-344)||(18566685-18566736)
chr6 (311-356)||(12203638-12203683)
chr6 (270-299)||(12440227-12440256)
chr6 (271-307)||(22497347-22497383)
[»] chr8 (16 HSPs)
chr8 (188-356)||(30477564-30477732)
chr8 (272-356)||(6928090-6928174)
chr8 (268-356)||(26916898-26916986)
chr8 (269-356)||(13754762-13754849)
chr8 (270-353)||(17927707-17927790)
chr8 (274-356)||(18322952-18323034)
chr8 (270-356)||(24507462-24507548)
chr8 (273-346)||(21416746-21416819)
chr8 (268-356)||(3459483-3459572)
chr8 (268-356)||(15058038-15058126)
chr8 (239-345)||(13764963-13765069)
chr8 (291-345)||(17698296-17698350)
chr8 (279-356)||(24070866-24070944)
chr8 (217-329)||(23269198-23269310)
chr8 (271-357)||(5859821-5859907)
chr8 (271-316)||(1909748-1909793)
[»] chr1 (20 HSPs)
chr1 (268-356)||(26977743-26977831)
chr1 (268-347)||(5671773-5671852)
chr1 (270-356)||(12177391-12177477)
chr1 (268-356)||(16050397-16050485)
chr1 (268-344)||(33101519-33101595)
chr1 (270-356)||(34273092-34273178)
chr1 (239-356)||(16030369-16030486)
chr1 (268-356)||(22414778-22414866)
chr1 (186-347)||(5459718-5459878)
chr1 (271-343)||(1659802-1659874)
chr1 (271-356)||(52565586-52565671)
chr1 (239-323)||(4601520-4601604)
chr1 (201-354)||(8018885-8019037)
chr1 (268-316)||(16522778-16522826)
chr1 (271-343)||(25408102-25408174)
chr1 (268-343)||(23728833-23728908)
chr1 (270-316)||(14255070-14255116)
chr1 (268-312)||(3590830-3590874)
chr1 (272-308)||(21682638-21682674)
chr1 (209-329)||(43344470-43344589)
[»] chr4 (15 HSPs)
chr4 (268-356)||(47253280-47253368)
chr4 (268-353)||(12683788-12683873)
chr4 (201-356)||(19809638-19809792)
chr4 (286-356)||(19643723-19643793)
chr4 (271-343)||(5518546-5518618)
chr4 (268-343)||(15514574-15514649)
chr4 (272-348)||(14003072-14003148)
chr4 (271-355)||(29157108-29157192)
chr4 (269-343)||(15742166-15742240)
chr4 (268-316)||(13171082-13171130)
chr4 (268-343)||(16012484-16012559)
chr4 (268-342)||(14602029-14602103)
chr4 (274-356)||(2674574-2674652)
chr4 (268-317)||(12415439-12415488)
chr4 (272-347)||(10981873-10981947)
[»] scaffold0291 (2 HSPs)
scaffold0291 (271-356)||(15430-15515)
scaffold0291 (270-353)||(8580-8663)
[»] scaffold0023 (1 HSPs)
scaffold0023 (268-353)||(95813-95898)
[»] chr7 (19 HSPs)
chr7 (268-347)||(7486548-7486627)
chr7 (268-356)||(9135361-9135449)
chr7 (239-347)||(21161216-21161323)
chr7 (268-356)||(26762911-26762999)
chr7 (270-356)||(5863192-5863278)
chr7 (239-356)||(9867939-9868056)
chr7 (271-347)||(39879393-39879469)
chr7 (268-343)||(10287609-10287684)
chr7 (268-317)||(5925514-5925563)
chr7 (239-343)||(13292136-13292240)
chr7 (268-345)||(12644788-12644866)
chr7 (269-315)||(43172068-43172114)
chr7 (268-317)||(18773984-18774033)
chr7 (268-356)||(29373449-29373537)
chr7 (268-343)||(5929024-5929099)
chr7 (269-343)||(16987105-16987179)
chr7 (255-300)||(27803358-27803403)
chr7 (268-316)||(9573466-9573514)
chr7 (271-343)||(34854249-34854321)
[»] scaffold0054 (1 HSPs)
scaffold0054 (271-356)||(68802-68885)
[»] scaffold0140 (1 HSPs)
scaffold0140 (268-356)||(6301-6389)
[»] scaffold0360 (1 HSPs)
scaffold0360 (270-356)||(13927-14013)
[»] scaffold0505 (1 HSPs)
scaffold0505 (268-347)||(7888-7967)
[»] scaffold0294 (1 HSPs)
scaffold0294 (273-343)||(256-326)
[»] scaffold0002 (2 HSPs)
scaffold0002 (239-343)||(379690-379794)
scaffold0002 (292-343)||(121024-121075)
[»] scaffold0205 (2 HSPs)
scaffold0205 (268-343)||(10928-11003)
scaffold0205 (269-343)||(22890-22964)
[»] scaffold0101 (1 HSPs)
scaffold0101 (239-316)||(10758-10835)
[»] scaffold0074 (1 HSPs)
scaffold0074 (268-347)||(35256-35336)
[»] scaffold0103 (1 HSPs)
scaffold0103 (268-343)||(40799-40874)
[»] scaffold0174 (1 HSPs)
scaffold0174 (274-347)||(29287-29358)
[»] scaffold0005 (1 HSPs)
scaffold0005 (268-342)||(215275-215349)
[»] scaffold0263 (1 HSPs)
scaffold0263 (286-343)||(20510-20567)
[»] scaffold0013 (1 HSPs)
scaffold0013 (270-310)||(4470-4510)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13085391 - 13085200
Alignment:
Q  1 taagctaacttataattagagatgtaaatgaaaatctatgaacgtcgaatagtacaacatctgtatttgttttgttggataaatatgaaatatgaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  13085391 taagctaacttataattagagatgtaaatgaaaatctatgaacgtcgaatagtacaatatctatatttgttttgttggataaatatgaaatatgaaccat 13085292  T
Q  101 atttatatccgcgtgtatatccgtttagcaagtaattcactgatttttagatatctatggaatatattcatggatatgtcaggttaggatgg 192  Q
    |||||||||||| || |||| | |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||| |||||||    
T  13085291 atttatatccgcatgcatattcatttagcaagtaattcacaaaattttagatatctatggaatatattcatggatatgtcaggtgaggatgg 13085200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 240 - 363
Target Start/End: Complemental strand, 13085189 - 13085066
Alignment:
Q  240 tcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaa 339  Q
    |||||| |||||||||||| ||||||  ||||| || |||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  13085189 tcttcgtggtgggatgaaagatgtctgcaggcatgtaagcattccaacgctcaagtcaataatgaaactgagaaagaatatgtagaaagtattgtgaaaa 13085090  T
Q  340 gtgaatcaaaccttgagaataatc 363  Q
    ||||||||||||||||||||||||    
T  13085089 gtgaatcaaaccttgagaataatc 13085066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 17143866 - 17143751
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    |||||| |||||||||||||  |||    ||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  17143866 gtcttcacggtgggatgaaaggtgttcttaggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaa 17143767  T
Q  339 agtgaatcaaaccttg 354  Q
    ||||||||| ||||||    
T  17143766 agtgaatcataccttg 17143751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 9801169 - 9801084
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||| |||| |||||||||||||| |||| |||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  9801169 gcacgttagcact-caacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 9801084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 356
Target Start/End: Complemental strand, 2312022 - 2311834
Alignment:
Q  168 tcatggatatgtcaggttaggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcg 267  Q
    |||| |||||||| ||| || ||||||| ||| |||| |||| | || |||||| | ||| ||||| |   ||||||| ||||| ||||||  |||||      
T  2312022 tcattgatatgtccggtgagtatggatgagaggcaacagtggcgcaaagtgctccggtacggtggcgaagagtcttcgtggtggaatgaaaggtgtctgc 2311923  T
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||  ||||||||||| |||||||||| |||| || |||  ||||||||||| |||||||||| |||||||| |||||||| ||||||||    
T  2311922 agatacgttagcactccaacgctcaaatcagcaagggatttgagaaagaatgtgtagaaagtgttgtgaaaggtgaatcataccttgag 2311834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 21342375 - 21342287
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||| || | ||||||||||||||||||||||||||| ||||| | | |||||||| ||||||||||||||||| || |||||    
T  21342375 aggcacgttaacagtacaacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaatcatacattgag 21342287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 30606931 - 30607019
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||| ||||||| | ||||||||||||||||||||||| ||||||||| |  ||||||||| ||||||||||||||| | ||||||||    
T  30606931 aggcatgttagcattccaacgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttgag 30607019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 8123002 - 8122915
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |||||||||||||||||||| || ||| ||| | ||||| |||||  ||||||||||||||||| ||||||||    
T  8123002 aggcacgttagcactccaacgctcaagtcagtaatgaaattga-aaaaactatgtcgaaagcgttgtgaaaagtgaatcataccttgag 8122915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 16704405 - 16704493
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||| ||| | ||||||| ||||||||||||||  |||||||||   |||||||||| ||||||||||||||||| ||||||||    
T  16704405 aggcacgttggcattccaacgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgag 16704493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 28715551 - 28715488
Alignment:
Q  293 agtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaatcataccttgag 28715488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 431401 - 431327
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaat 345  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| |  || ||||||  ||||||||||||||    
T  431401 cacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtgaaaagtgaat 431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 28723862 - 28723784
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatc 346  Q
    ||||||||| ||| | |||||||||||||| |||||||||| ||||||| | |||||||| | ||||||||||||||||    
T  28723862 aggcacgttggcaatccaacgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaatc 28723784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 12516191 - 12516263
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||||| | |||||||||| |||||||||||||||||||| | ||||  |||| |||||||||||||    
T  12516191 cacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtga 12516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 1770846 - 1770903
Alignment:
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||| ||||||||||||||| |||| | |||||||||| |||||||||||||    
T  1770846 acgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 6109741 - 6109653
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |||| || ||||||||||| ||||||| ||  ||| |  ||||||| ||||||||||||||||| | ||||||    
T  6109741 aggcacgttagcactccaacacttaagtcagtaatcgaactgaaaacaaatgtaaagaaagtgttgtgaaaagtgaatcacatcttgag 6109653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 21649418 - 21649471
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgta 323  Q
    ||||||||||||  ||||| ||||||||||||||||||||||| ||||| ||||    
T  21649418 gcacgttagcaccccaacgatcaagtcagtaatggaactgagagagaatgtgta 21649471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 17485741 - 17485667
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaa 313  Q
    ||||||||||||| | ||||  |||||   ||||| |||||||  ||||||||||||||||||||||| ||||||    
T  17485741 gtcttcgcggtggaacgaaaggtgtctgtgggcacattagcaccccaacgctcaagtcagtaatggaattgagaa 17485667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 12108440 - 12108472
Alignment:
Q  286 acgctcaagtcagtaatggaactgagaaagaat 318  Q
    |||||||||| ||||||||||||||||||||||    
T  12108440 acgctcaagttagtaatggaactgagaaagaat 12108472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 21652652 - 21652700
Alignment:
Q  275 ttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgta 323  Q
    ||||||||| ||| |||||||||||||||||||| ||| ||||| ||||    
T  21652652 ttagcacttaaactctcaagtcagtaatggaactaagagagaatgtgta 21652700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 22903096 - 22903184
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  22903096 aggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 22903184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 27083416 - 27083238
Alignment:
Q  177 tgtcaggttaggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgtt 276  Q
    |||| ||| ||||| |||| || |||||||||| ||||||||||||  ||||||||| |   ||||||||||| | | ||||  |||||  || ||||||    
T  27083416 tgtccggtgaggattgatgagaaacaacggtggcggaatgtgctctattacagtggcgaagagtcttcgcggtagaacgaaatgtgtctgcagacacgtt 27083317  T
Q  277 agcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||| |||| ||||||||||||| | ||||| |||||| | |||||||||| ||||||||||||||||| ||||||||    
T  27083316 agcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 27083238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 356
Target Start/End: Original strand, 20025191 - 20025374
Alignment:
Q  173 gatatgtcaggttaggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggca 272  Q
    |||||||| ||| |||||||||| ||| ||   |||| |||||||||| || ||| ||| ||||  ||||||||||||||| ||||  |||||  |  ||    
T  20025191 gatatgtctggtgaggatggatgagaggcactagtggcggaatgtgctttggtacggtgtcaatgagtcttcgcggtgggacgaaaggtgtctgcacaca 20025290  T
Q  273 cgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||| |||| |||||||   ||||| |||| |||||||||||| | |||||||||| ||||| |||||||||||  |||||||    
T  20025291 cgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcattccttgag 20025374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 26994691 - 26994608
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttg 354  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||| | | ||||| || ||||||||||||||||| ||||||    
T  26994691 cacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttg 26994608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 25537410 - 25537483
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||| | ||||  |||| |||||||||||||    
T  25537410 gcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtga 25537483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 25333756 - 25333827
Alignment:
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgaga 357  Q
    |||||||||||||||||| |||| ||| ||| | |||||||||| |||| |||||||||||| || ||||||    
T  25333756 acgctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtgaatcatactttgaga 25333827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 32418556 - 32418486
Alignment:
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||| | ||||||| |||||||| | |||||| ||| ||||||| ||||||||| ||||||||    
T  32418556 acgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtgaatcataccttgag 32418486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 8938915 - 8939002
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||| |||| ||| |||| |||||||| ||||||||||||||| | |||| |||||  || ||||||||||||| || |||||    
T  8938915 aggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaagt-gtgggaaaagtgaatcatacattgag 8939002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 16621211 - 16621259
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    |||||||||| |||||||||||||||| || || |||||||||||||||    
T  16621211 aggcacgttaacacttcaacgctcaagccaatattggaactgagaaaga 16621259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 24647302 - 24647366
Alignment:
Q  279 cacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||| |||||||||| |||||||||||||||| ||||| | ||||  |||| |||||||||||||    
T  24647302 cactccaacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 24647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 26348167 - 26348127
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaact 308  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  26348167 aggcacgttagcactccaacgctcaagtcattaatggaact 26348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 22865768 - 22865839
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||  |||||||||| |||||||||||||||||| | | ||||  || | |||||||||||||    
T  22865768 acgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtga 22865839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 19993232 - 19993182
Alignment:
Q  289 ctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaa 339  Q
    ||||||||||||||||||||||||||||   ||| |||||| |||||||||    
T  19993232 ctcaagtcagtaatggaactgagaaagagcgtgttgaaagtgttgtgaaaa 19993182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 227795 - 227718
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||| ||||||||||| | |||||  |||||||||||||||  ||||||||||| |  | || ||||||||||||    
T  227795 gtcttcgtggtgggatgaagagtgtctgcaggcacgttagcactcaaacgctcaagttaccattgaaactgagaaaga 227718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 18799786 - 18799827
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgaga 312  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  18799786 cacgttagcactccgacgatcaagtcagtaatggaactgaga 18799827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 34493542 - 34493604
Alignment:
Q  290 tcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||||| ||| | ||    |||||||||| ||||||||||||||||| ||||||||    
T  34493542 tcaagtcagtaatggaattgaaagag----tgtagaaagtgttgtgaaaagtgaatcataccttgag 34493604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 356
Target Start/End: Complemental strand, 45258322 - 45258152
Alignment:
Q  186 aggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttca 285  Q
    |||||||||| ||| |||||||| |||||  |||| |||||  ||||| ||  ||||||||||||| | |||| ||||||  |||||||||| |||| ||    
T  45258322 aggatggatgagaggcaacggtgatggaaaatgctttgatatggtggcgatgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactcca 45258223  T
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    | |||||||| ||||||| |||| ||||||||| ||| |||||| ||||||||||||||||| ||||||||    
T  45258222 aagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtgaatcataccttgag 45258152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 345
Target Start/End: Complemental strand, 27846689 - 27846530
Alignment:
Q  186 aggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttca 285  Q
    |||||||||| ||| |||| |||  |||||||| || | ||| ||||||||  |||||||| || ||| ||||| || ||  ||||||||||||||| ||    
T  27846689 aggatggatgagaggcaacagtgacggaatgtgttccggtacggtggcaatgagtcttcgcagttggacgaaaagtgcctgcaggcacgttagcactcca 27846590  T
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaat 345  Q
    ||| ||||||||||||||||||||||||| | | |||||||||| ||||| |||||||||    
T  27846589 acgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaat 27846530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 24499796 - 24499877
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacctt 353  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| | ||||||||||||||||| |||||    
T  24499796 acgttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcatacctt 24499877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 3586367 - 3586454
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||| | |  ||||||||| ||||||||||||||||| ||||||||    
T  3586367 ggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaatcataccttgag 3586454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 45714998 - 45715085
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttga 355  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| | |||| ||||| | ||||||| ||||||| |||||||    
T  45714998 aggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtgaaaattgaatcataccttga 45715085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 36267507 - 36267589
Alignment:
Q  274 gttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||| |||| |||||||||||||||||||| |||||||||||| | |||||||||  ||||||||||||||||| ||||||||    
T  36267507 gttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaatcataccttgag 36267589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 347
Target Start/End: Complemental strand, 12127781 - 12127672
Alignment:
Q  238 ggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaa 337  Q
    |||||||||||||||| ||||  |  ||  ||||||||||||||| |||||||||||||||||||| |||| |||| |  | |||||||||| |||||||    
T  12127781 ggtcttcgcggtgggacgaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaa 12127682  T
Q  338 aagtgaatca 347  Q
    ||||||||||    
T  12127681 aagtgaatca 12127672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 15825157 - 15825230
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagt 341  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||    
T  15825157 aggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 356
Target Start/End: Original strand, 12168881 - 12169064
Alignment:
Q  173 gatatgtcaggttaggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggca 272  Q
    |||||||| ||| | |||||||| ||| |||| |||| ||||  ||||| | |||  |||| ||| ||||| ||||||| | ||||  |||||  |||||    
T  12168881 gatatgtccggtgaagatggatgagaggcaacagtggcggaaaatgctccggtacc-tggcgataagtctttgcggtggaacgaaaggtgtctgcaggca 12168979  T
Q  273 cgttagcacttcaacgct-caagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    | ||| |||| ||||||| |||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| | ||||||||    
T  12168980 cattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgag 12169064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 19919130 - 19919066
Alignment:
Q  292 aagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  19919130 aagtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaatcataccttgag 19919066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 20120350 - 20120438
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| | || ||||||||||||||| |||||||||||| | ||| ||||||  ||||| |||||||||| ||||||||    
T  20120350 aggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatcataccttgag 20120438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 18770317 - 18770392
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||||||||   |||||||||||||||||| || ||||||||| | |||||||||| |||||||||||||    
T  18770317 aggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 18135845 - 18135949
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    |||||| |||||||||||||  || ||  ||||||||||| |||   |||||||||| |||||||||||||||||||| | ||||  |||| |||| |||    
T  18135845 gtcttcacggtgggatgaaaggtgcctgtaggcacgttagtactctgacgctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaa 18135944  T
Q  339 agtga 343  Q
    |||||    
T  18135945 agtga 18135949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 344
Target Start/End: Complemental strand, 10923282 - 10923177
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||||||||| | ||||  ||| |  |||||||||| |||| | || ||||||||||| |||||||| | ||||| | ||||||||||  |||||||    
T  10923282 gtcttcgcggtggaacgaaaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaaa 10923183  T
Q  339 agtgaa 344  Q
    ||||||    
T  10923182 agtgaa 10923177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 30638541 - 30638614
Alignment:
Q  243 tcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||||| | |||| ||||||  || ||||||| |||||| ||||||| ||||||||||||||| |||||||    
T  30638541 tcgcggtggaaagaaagatgtctacagacacgttaacacttcgacgctcatgtcagtaatggaactaagaaaga 30638614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 24755473 - 24755549
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatc 346  Q
    ||||||||| ||| |||| ||||||||||| ||||||||  |||| | | |||||||| | ||||||||||||||||    
T  24755473 gcacgttagtactccaaccctcaagtcagtgatggaactctgaaaaagtgtgtagaaattgttgtgaaaagtgaatc 24755549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 18134338 - 18134400
Alignment:
Q  285 aacgctcaagtcagtaatggaactgagaaagaatatgtag--aaagtattgtgaaaagtgaat 345  Q
    |||||| ||| ||||||||||| ||||||||| |||||||  ||||||||||||||| |||||    
T  18134338 aacgctaaagccagtaatggaattgagaaagagtatgtagaaaaagtattgtgaaaaatgaat 18134400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 24157392 - 24157350
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgaga 312  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  24157392 gcacgttagcactctgacgctcaagtcagtaatggaactgaga 24157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 27933861 - 27933800
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagta 300  Q
    |||||||||||||||| ||| |||| |  |||||| |||||||||||| |||||||| ||||    
T  27933861 gtcttcgcggtgggataaaagatgtttgtaggcacattagcacttcaatgctcaagtaagta 27933800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 29711023 - 29711059
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaa 306  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  29711023 gcacgttagcactccaacgctcaagtcactaatggaa 29711059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 19305466 - 19305555
Alignment:
Q  267 gaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||||||||| ||||||||    
T  19305466 gaggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 19305555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 30680966 - 30681083
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||||||||||| ||||  |||||  |  |||||||||||| |||||||||||||||||||| |||||| |||||   ||||||| |||||||||||    
T  30680966 gtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgtgaaa 30681065  T
Q  339 agtgaatcaaaccttgag 356  Q
    ||||||||| ||||||||    
T  30681066 agtgaatcataccttgag 30681083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 689938 - 689857
Alignment:
Q  275 ttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||| ||| ||||||||||||||||||||||||||||  | |||| ||||| ||||||||||||||||  ||||||||    
T  689938 ttagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatcgtaccttgag 689857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 11087476 - 11087593
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||||||||| | ||||  |||||  || ||| |||||||||  || || |||||||||||| |||||||||||| ||||||||  || ||||||||    
T  11087476 gtcttcgcggtggaacgaaagctgtctgcagacacattagcactttgacccttaagtcagtaatgtaactgagaaagagtatgtagattgtgttgtgaaa 11087575  T
Q  339 agtgaatcaaaccttgag 356  Q
    ||||||||| ||||||||    
T  11087576 agtgaatcataccttgag 11087593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 18147313 - 18147394
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacctt 353  Q
    |||||| |||| |||||||||||||| ||||||||| |||||||| | |||||||||| ||||||||||||| ||| |||||    
T  18147313 acgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgactcatacctt 18147394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 20148323 - 20148405
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttga 355  Q
    |||||||||||| || ||||||||| |||||||||| |||||||||   |||||||||| ||||||||||||||||| |||||||    
T  20148323 cacgttagcactccatcgctcaagttagtaatggaattgagaaaga--gtgtagaaagtgttgtgaaaagtgaatcataccttga 20148405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 22184505 - 22184423
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttga 355  Q
    |||||||||||| || ||||||||| |||||||||| |||||||||   |||||||||| ||||||||||||||||| |||||||    
T  22184505 cacgttagcactccatcgctcaagttagtaatggaattgagaaaga--gtgtagaaagtgttgtgaaaagtgaatcataccttga 22184423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 3404926 - 3404862
Alignment:
Q  292 aagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||| ||||||||    
T  3404926 aagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcataccttgag 3404862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 31295623 - 31295548
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||||||| | ||||  |||| |||||||||||||    
T  31295623 aggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 338
Target Start/End: Original strand, 34187213 - 34187372
Alignment:
Q  179 tcaggttaggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttag 278  Q
    |||||| |||||| ||| ||| |||||| || |||| ||| || | ||||||||  ||| ||||| ||||||| | ||||  |||||  || ||||||||    
T  34187213 tcaggtgaggatgaatgagaggcaacggcggcggaaagtgttccgctacagtggtgataagtctttgcggtggaacgaaaggtgtctgcagacacgttag 34187312  T
Q  279 cacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    |||  |||| |||||||||||||||||||||||||||| | |||| ||||| | ||||||    
T  34187313 cacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtgaaa 34187372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 9277385 - 9277301
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||| |||||| ||||| | | | ||||||||||| ||||||||    
T  9277385 cacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgtggag-aaagtgaatcataccttgag 9277301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 15480408 - 15480340
Alignment:
Q  289 ctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgaga 357  Q
    ||||||||| ||||| |||||||||| | | |||||||||| ||||||||||||||||| |||||||||    
T  15480408 ctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcataccttgaga 15480340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 16343582 - 16343657
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||  ||||  |||| ||||| |||||||    
T  16343582 aggcacgttagcactccaacactcaagtcagtaatggaactgagagagaaagtgtaagaagtgttgtggaaagtga 16343657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 9292105 - 9292020
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||   |||||||||||||||| ||||||||||||| | |||||| |||||  || ||||||||||||| ||||||||    
T  9292105 gcacgttagcacgctaacgctcaagtcagtattggaactgagaaatagtatgtaaaaagt-gtgggaaaagtgaatcataccttgag 9292020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 14268440 - 14268513
Alignment:
Q  274 gttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||||||| ||||||| ||||||||||||||||| ||| | | | |||||||||| || ||||||||||||||    
T  14268440 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatca 14268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 12449700 - 12449596
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||| ||||||| ||||  |||||  |||||||||||||||   |||||||||||||||||||| |||| ||||| | ||||  |||| ||||| ||    
T  12449700 gtcttcgtggtgggacgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttgtggaa 12449601  T
Q  339 agtga 343  Q
    |||||    
T  12449600 agtga 12449596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 19730679 - 19730631
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  19730679 aggcatgttagcactccaacgctcaagtcaataatggaactgagaaaga 19730631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 25008477 - 25008417
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagt 329  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||||| | |||| |||||    
T  25008477 ggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagt 25008417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 9403175 - 9403250
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||| ||| | |||||||||||| |||||||||||||||||| | ||||  |||| ||||| |||||||    
T  9403175 aggcacgttagaactccgacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtga 9403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 14080487 - 14080565
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    |||||| ||||||||   |||||||||| ||||||| |||||||||||| | ||||| |||| |||||||||||||||||    
T  14080487 aggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtgaatca 14080565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 12424402 - 12424328
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtg 342  Q
    ||||||||||||||| | ||  ||||||||||||||||||||||| ||||  | || ||||| ||||||||||||    
T  12424402 aggcacgttagcactacgacaatcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtg 12424328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 16130993 - 16131059
Alignment:
Q  290 tcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||||||||| ||||| | |  ||||||| |||||||| |||||||| ||||||||    
T  16130993 tcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcataccttgag 16131059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 10115770 - 10115689
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacct 352  Q
    ||||||||| |  ||| |||||||||||||||| ||||||||||||    ||| ||||| ||||||||||||||||| ||||    
T  10115770 cacgttagctccccaatgctcaagtcagtaatgaaactgagaaagagcgagtaaaaagttttgtgaaaagtgaatcatacct 10115689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 4251132 - 4251044
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||| || |||| ||||| |||||||||||||| || ||||||||| | || ||| ||| ||||||||||| ||||| | ||||||    
T  4251132 aggcacgataacactccaacgttcaagtcagtaatgaaaatgagaaagagtgtggagagagtgttgtgaaaagtaaatcatatcttgag 4251044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 13823459 - 13823419
Alignment:
Q  274 gttagcacttcaacgctcaagtcagtaatggaactgagaaa 314  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  13823459 gttagcactccaacgatcaagtcagtaatggaactgagaaa 13823419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 22572048 - 22572135
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||||||   ||||||| ||||||||||||| ||| ||||| | ||||||| || ||||| ||||||||||| | ||||||    
T  22572048 aggcacgttagcactatgacgctcatgtcagtaatggaattga-aaagagtgtgtagaaggtgttgtgtaaagtgaatcatatcttgag 22572135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 31423894 - 31423846
Alignment:
Q  299 taatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||| |||||||||||| |||||||||||| |||||| ||||||||||    
T  31423894 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaatca 31423846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 34573066 - 34572994
Alignment:
Q  284 caacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||| |||||| ||||| ||||| | | |||||||||| | ||||||||||||||| || |||||    
T  34573066 caacgctcaagttagtaatagaactaagaaaaagtgtgtagaaagtgtggtgaaaagtgaatcatacattgag 34572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 17380123 - 17380178
Alignment:
Q  291 caagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatc 346  Q
    |||||||||||| ||||||||||||| | || | ||||| ||||||||||||||||    
T  17380123 caagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtgaatc 17380178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 18566685 - 18566736
Alignment:
Q  293 agtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaa 344  Q
    |||||||||||||||||||||||| | |||||||||  |||| |||||||||    
T  18566685 agtcagtaatggaactgagaaagattgtgtagaaagcgttgtaaaaagtgaa 18566736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 12203683 - 12203638
Alignment:
Q  311 gaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||| |||||||||||| ||||||||||||||||| || |||||    
T  12203683 gaaagagtatgtagaaagtgttgtgaaaagtgaatcatactttgag 12203638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 12440256 - 12440227
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagt 299  Q
    ||||||||||||||||||||||||||||||    
T  12440256 gcacgttagcacttcaacgctcaagtcagt 12440227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 22497383 - 22497347
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaac 307  Q
    |||||||||||| | ||||||||||||||||||||||    
T  22497383 cacgttagcactccgacgctcaagtcagtaatggaac 22497347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 356
Target Start/End: Original strand, 30477564 - 30477732
Alignment:
Q  188 gatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaac 287  Q
    |||||||| ||| |||| |||| |||| ||||||   ||  ||||||||  | |||||||||| || |||| ||||||  | ||||||||||||| ||||    
T  30477564 gatggatgagaggcaacagtggcggaaagtgctccagtatggtggcaatgagacttcgcggtgagacgaaagatgtctgcatgcacgttagcactccaac 30477663  T
Q  288 gctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||||| | |||||||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  30477664 gctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 30477732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 6928174 - 6928090
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  6928174 acgttagcatttcaacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 6928090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 26916986 - 26916898
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||| |   |||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||| ||| ||||||||    
T  26916986 aggcacgttagcgcactaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcataccttgag 26916898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 13754762 - 13754849
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||| |||| || ||||||||||||||||| |||||||||||| | |||||||||| ||||| ||||||||||  ||||||||    
T  13754762 ggcacgttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctaccttgag 13754849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 17927790 - 17927707
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacctt 353  Q
    ||||||||||||| ||||||| |||||||||||||||||||||  || |||||||||||| || ||||| |||||||| |||||    
T  17927790 gcacgttagcactccaacgcttaagtcagtaatggaactgagattgagtatgtagaaagtgttatgaaaggtgaatcatacctt 17927707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 18322952 - 18323034
Alignment:
Q  274 gttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||| |||| ||||||||||||||||||| ||||||||||||| | |||||||| | ||||||||||||||||| || |||||    
T  18322952 gttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaatcatacattgag 18323034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 24507462 - 24507548
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||| ||| ||||| |||||||| |||||||| ||||||||| | | |||||||| ||||||||||||||||| ||||||||    
T  24507462 gcacgttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaatcataccttgag 24507548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 21416746 - 21416819
Alignment:
Q  273 cgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatc 346  Q
    |||||||||| | |||||||||||||||||| |||||||||||| | |||||||||| ||||||||| ||||||    
T  21416746 cgttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatc 21416819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 3459572 - 3459483
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtatt-gtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |  ||||||||||||||||||||||||| |||| | |||||||||| || ||||||||| ||||  ||||||||    
T  3459572 aggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagtaaatcgtaccttgag 3459483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 15058038 - 15058126
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |||||| ||||| ||||||| || ||||||| ||| |||||||||| | ||||||| | ||||| ||||||||    
T  15058038 aggcacgttagcactacaacgcacaagttagtaatgaaattgagaaaaaatgtgtagaaagtgtggtgaaaaataaatcataccttgag 15058126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 13764963 - 13765069
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    |||||||||||| || ||||  |||||  ||||||||||  ||| ||| | |||||| ||||||| |||||||||||| | |||||||||| ||||| ||    
T  13764963 gtcttcgcggtgtgacgaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaa 13765062  T
Q  339 agtgaat 345  Q
    |||||||    
T  13765063 agtgaat 13765069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 17698350 - 17698296
Alignment:
Q  291 caagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaat 345  Q
    ||||||||||||||||| |||||||| | |||||||||| |||||||||||||||    
T  17698350 caagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 17698296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 24070866 - 24070944
Alignment:
Q  279 cacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca-aaccttgag 356  Q
    |||| |||| || ||||||||||||||||| ||||||| | |||||||||| |||||| |||||||||| |||||||||    
T  24070866 cactccaacacttaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtgaatcataaccttgag 24070944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 329
Target Start/End: Original strand, 23269198 - 23269310
Alignment:
Q  217 tgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||| ||| ||||| ||  ||||| ||||||| | ||||  |||||  ||||| ||||||||| |||| || ||||||||||||||||||| |||||    
T  23269198 tgctctggtacggtggcgatgagtctttgcggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaaga 23269297  T
Q  317 atatgtagaaagt 329  Q
     | ||||||||||    
T  23269298 gtgtgtagaaagt 23269310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 5859821 - 5859907
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgaga 357  Q
    |||||||||||| |||||||||||||| |||||||||| ||||| | | ||| || ||| || ||| |||||||||  |||||||||    
T  5859821 cacgttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgttgagagtgttttgagaagtgaatcgtaccttgaga 5859907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 1909793 - 1909748
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||    
T  1909793 cacgttagcatttcaacgctaaagtcagtaatgaaactgagaaaga 1909748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 26977743 - 26977831
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||| ||||||||    
T  26977743 aggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatcataccttgag 26977831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 5671773 - 5671852
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  5671773 aggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatca 5671852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 12177391 - 12177477
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||| | || |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| | ||||||||    
T  12177391 gcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgag 12177477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 16050397 - 16050485
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||| | |||||||||| | |||||||||||| || ||||||||    
T  16050397 aggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtgaaaagtgaaccataccttgag 16050485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 33101595 - 33101519
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaa 344  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||| | | |||||||||| ||||||||||||||    
T  33101595 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaa 33101519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 34273092 - 34273178
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||| | |||||||||| ||||| ||||||| ||| ||||||||    
T  34273092 gcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgactcataccttgag 34273178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 16030369 - 16030486
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    |||||| |||||| ||||||  |||||  |||||||||| || |  || |||||||||||||||||||||||  |||| | |||||||||| ||||||||    
T  16030369 gtcttcacggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaa 16030468  T
Q  339 agtgaatcaaaccttgag 356  Q
    ||||||||| ||||||||    
T  16030469 agtgaatcataccttgag 16030486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 22414778 - 22414866
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||||||   |||||||||||||||||| |||||| ||| | | |||||||||| ||||||||||||||||| | ||||||    
T  22414778 aggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaatcatatcttgag 22414866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 347
Target Start/End: Complemental strand, 5459878 - 5459718
Alignment:
Q  186 aggatggatgggagacaacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttca 285  Q
    |||||||||| ||| | ||| ||| ||||||||||||| ||| ||||| ||  ||||||| ||||||| ||||  ||  |  ||| ||||||||||| ||    
T  5459878 aggatggatgagaggcgacgatggcggaatgtgctctggtacggtggcgatgagtcttcgtggtgggacgaaaggtgcatgcaggtacgttagcactcca 5459779  T
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||| ||||  |||||| ||| |||||||||| | |||||||||| ||||| |||||||||||    
T  5459778 acgttcaaaacagtaacgga-ctgagaaagagtgtgtagaaagtgttgtgtaaagtgaatca 5459718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 1659874 - 1659802
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||| |||| |||||||||||||| ||||||| |||||||||||| ||||  |||| |||||||||||||    
T  1659874 cacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtga 1659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 52565586 - 52565671
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||   |||||||||||||||| |||||||| ||||| |  | ||||||| ||||||||||||||||| | ||||||    
T  52565586 cacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtgaatcataacttgag 52565671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 4601604 - 4601520
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgta 323  Q
    ||||||||||||| | ||||  || ||  ||||||||||||||| | |||||||||||||||||| |||||||||| ||| ||||    
T  4601604 gtcttcgcggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaataatgtgta 4601520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 8018885 - 8019037
Alignment:
Q  201 caacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagta 300  Q
    ||||| |||||||| |||||| | ||| ||||| ||  ||||||| ||||||| ||||  | |||  ||||||||||||||| | |||||||||||||||    
T  8018885 caacgttggtggaaagtgctccggtacggtggcgatgagtcttcgtggtgggacgaaaggtatctacaggcacgttagcactacgacgctcaagtcagta 8018984  T
Q  301 atggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttg 354  Q
      |||| |||||  |||| || | ||||||  | ||||||||||||| ||||||    
T  8018985 tgggaaatgagatggaatgtgcaaaaagta-ggggaaaagtgaatcataccttg 8019037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 16522778 - 16522826
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||||||||||||||||| |||||||| ||| |||| |||||||||    
T  16522778 aggcacgttagcacttcaacgttcaagtcaataaaggaattgagaaaga 16522826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 25408102 - 25408174
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||||| ||| |||||||||||||||| |||||| | ||| | ||||  |||| |||||||||||||    
T  25408102 cacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 25408174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 23728908 - 23728833
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||| |   |||||||||||| |||||||| ||||||||| | ||||  |||| |||||||||||||    
T  23728908 aggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 23728833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 14255116 - 14255070
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||| ||||||| |||||||||||||| ||||| ||||||||||||    
T  14255116 gcacgatagcactccaacgctcaagtcattaatgaaactgagaaaga 14255070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 3590830 - 3590874
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgaga 312  Q
    |||||| |||||||| | ||| |||||||||||||||||||||||    
T  3590830 aggcaccttagcactccgacgatcaagtcagtaatggaactgaga 3590874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 21682674 - 21682638
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaact 308  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  21682674 acgtttgcactccaacgctcaagtcagtaatggaact 21682638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 43344589 - 43344470
Alignment:
Q  209 gtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaact 308  Q
    |||||| ||| |||| ||| ||||| ||  ||||| ||||||||||||||  |||||  ||  |||||||||||  |||||||||||||||| || ||||    
T  43344589 gtggaaagtgttctggtacggtggcgatgagtctttgcggtgggatgaaaggtgtctgcagaaacgttagcactcgaacgctcaagtcagtattgaaact 43344490  T
Q  309 gagaaagaatatgtagaaagt 329  Q
     ||||||| | |||| |||||    
T  43344489 -agaaagagtgtgtaaaaagt 43344470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 47253280 - 47253368
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||||    
T  47253280 aggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaatcataccttgag 47253368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 12683788 - 12683873
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacctt 353  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||||||| | |||||||||| ||||||||||||||||| |||||    
T  12683788 aggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatacctt 12683873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 19809638 - 19809792
Alignment:
Q  201 caacggtggtggaatgtgctctgatacagtggcaataggtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagta 300  Q
    ||||||||||||||||||||||| ||| ||| | ||  ||||||||||| | | ||||  |  ||  || || ||||||||| |||||||||||||||||    
T  19809638 caacggtggtggaatgtgctctggtacggtgacgatgagtcttcgcggttg-acgaaaggttcctgcagacatgttagcactccaacgctcaagtcagta 19809736  T
Q  301 atggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||| |||| ||||||| | |||||||||| ||||||||||||||| | ||||||||    
T  19809737 atgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgag 19809792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 19643723 - 19643793
Alignment:
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  19643723 acgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaatcataccttgag 19643793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 5518546 - 5518618
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||  |||| ||||| |||||||    
T  5518546 cacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtga 5518618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 15514649 - 15514574
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||  |||| ||||| |||||||    
T  15514649 aggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtga 15514574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 14003148 - 14003072
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaa 348  Q
    |||||||||||   ||||||||||||||||||||||||||||||| | ||| |||||| || |||||| ||||||||    
T  14003148 acgttagcactatgacgctcaagtcagtaatggaactgagaaagagtttgtggaaagtgttatgaaaaatgaatcaa 14003072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 29157108 - 29157192
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttga 355  Q
    |||||| ||||| |||||||||||| |||||||||||||||||| | | ||||| |||| ||||| |||||||| || |||||||    
T  29157108 cacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaaccataccttga 29157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 15742240 - 15742166
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| | | ||||  |||| |||||||||||||    
T  15742240 ggcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtga 15742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 13171082 - 13171130
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  13171082 aggcacgttagcactccaactctcaagtcagtaatggaactgagcaaga 13171130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 16012559 - 16012484
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||| |||| | ||||||||||||||||||||||||||| ||| | ||||  ||| ||||||| ||||||    
T  16012559 aggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgtaagaagcattgtgagaagtga 16012484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 14602103 - 14602029
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtg 342  Q
    ||||||||||||| | |||||||||||||||||||| |||||| | ||| | ||||  |||| ||||||||||||    
T  14602103 aggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 14602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 2674652 - 2674574
Alignment:
Q  274 gttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||| |||||| ||||||| ||||| ||||||||  |    |||||||||| ||||||||||||||||| ||||||||    
T  2674652 gttagcactccaacgcacaagtcaataatgtaactgagagtg----tgtagaaagtgttgtgaaaagtgaatcataccttgag 2674574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 12415439 - 12415488
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaa 317  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||| ||||    
T  12415439 aggcacgttagcactccaacgatcaagtaagtaatggaactgagagagaa 12415488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 10981873 - 10981947
Alignment:
Q  272 acgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||| ||||| |||| ||||||||||||||||||| |||||||| | |||| |||||  || |||||||||||||    
T  10981873 acgttggcactccaacactcaagtcagtaatggaaccgagaaagagtgtgtaaaaagt-gtgggaaaagtgaatca 10981947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 15515 - 15430
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||| | |||||| |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  15515 cacgttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgag 15430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 8663 - 8580
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacctt 353  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||| | | |||||||||| ||||||||||||||||| |||||    
T  8663 gcacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtgaatcatacctt 8580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 95898 - 95813
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaacctt 353  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| |  ||||||||| ||||||||||||||||| |||||    
T  95898 aggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaatcatacctt 95813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 7486548 - 7486627
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| | ||||||| || |||||||||||||||||    
T  7486548 aggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtgaatca 7486627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 9135449 - 9135361
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||| | |||| ||| | ||||||||||||||||| ||||||||    
T  9135449 aggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatcataccttgag 9135361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 21161216 - 21161323
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||||||||| | ||||  |||||  ||||||||||||||| |||||||||||||||||||||| || ||||||  | |||||||||| ||||||||    
T  21161216 gtcttcgcggtggaacgaaag-tgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaa 21161314  T
Q  339 agtgaatca 347  Q
    |||||||||    
T  21161315 agtgaatca 21161323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 26762999 - 26762911
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||| | | |||||||||| ||||||||||||||||| ||||||||    
T  26762999 aggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 26762911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 5863192 - 5863278
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||| | |||| |||||||||||| ||||||||    
T  5863192 gcacgttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgtaaaaagtgaatcataccttgag 5863278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 9868056 - 9867939
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||||||||||| ||||  ||  |  ||| |||||||||||   |||||||||||||||||||||||||| |||| | |||||||||| |||| |||    
T  9868056 gtcttcgcggtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaa 9867957  T
Q  339 agtgaatcaaaccttgag 356  Q
    ||||||||| ||||||||    
T  9867956 agtgaatcataccttgag 9867939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 39879393 - 39879469
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||| | |||| ||||| |||| ||||||||||||    
T  39879393 cacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtgaatca 39879469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 10287684 - 10287609
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| | | ||||  |||| |||||||||||||    
T  10287684 aggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaagtga 10287609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 5925563 - 5925514
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaa 317  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  5925563 aggcacgttagcactccaacgatcaagtcagtaatggaactgagagagaa 5925514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 13292240 - 13292136
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||| ||||| | ||||  |||||  ||| |||||||||||  ||||||||||||||||||| |||||| ||||| | ||||  |||| ||||||||    
T  13292240 gtcttcgtggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaa 13292141  T
Q  339 agtga 343  Q
    |||||    
T  13292140 agtga 13292136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 12644788 - 12644866
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtatt-gtgaaaagtgaat 345  Q
    ||||| ||||||||| | ||||||| ||||||||||||||||||||| | | ||| |||||| || |||||||||||||    
T  12644788 aggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttggtgaaaagtgaat 12644866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 43172114 - 43172068
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaag 315  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||||    
T  43172114 ggcacgttagcactccaatgctcaagtcaataatggaactgagaaag 43172068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 18773984 - 18774033
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaa 317  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||| ||||    
T  18773984 aggcacgttagcacttcgacgatcaaatcagtaatggaactgagagagaa 18774033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 29373449 - 29373537
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||| ||||| ||| ||| ||||||||||||  || || ||||||||| | |||||||| | ||||||||| ||||||| ||||||||    
T  29373449 aggcatgttaggactccaatgctcaagtcagttgtgtaattgagaaagagtgtgtagaaaatgttgtgaaaattgaatcataccttgag 29373537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 5929099 - 5929024
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||| |||||||| |||| |||||||||||||||||||||| | |||   ||||  |||| |||||||||||||    
T  5929099 aggcacattagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtga 5929024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 16987179 - 16987105
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||   || |||||| ||||||||||| ||||||||| | ||||  |||| |||||||||||||    
T  16987179 ggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtga 16987105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 27803358 - 27803403
Alignment:
Q  255 gaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagta 300  Q
    |||| ||||||  ||||||||||||||| |||||||||||||||||    
T  27803358 gaaagatgtctacaggcacgttagcactccaacgctcaagtcagta 27803403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 9573514 - 9573466
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||||||||||| |||||| ||||||| ||  ||||||||||||||    
T  9573514 aggcacgttagcactccaacgcacaagtcaatatgggaactgagaaaga 9573466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 34854249 - 34854321
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||   |||||||||| ||||||| |||||||||||| | ||||  || | |||||||||||||    
T  34854249 cacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtga 34854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 68885 - 68802
Alignment:
Q  271 cacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||  |||||||| ||||||||||||||||| ||||||||    
T  68885 cacgttagcactccaacgctcaagttagtaatggaactgagaaagagta--tagaaagtgttgtgaaaagtgaatcataccttgag 68802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 6301 - 6389
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||| | | |||||||||| ||||||||||||| ||  ||||||||    
T  6301 aggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcgtaccttgag 6389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 13927 - 14013
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 356  Q
    ||||||||| ||| ||| |||||||||||||||| |||||||||||| | |||||||||| |||||| |||||||||| ||||||||    
T  13927 gcacgttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttgag 14013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 7888 - 7967
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    |||||||||||||||  ||||||||| ||||||||| || ||||||||| | |||||||||| |||||||||||||||||    
T  7888 aggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtgaatca 7967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 326 - 256
Alignment:
Q  273 cgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||| | ||||||||||||||||||||||||||||||| | ||||  |||| |||||||||||||    
T  326 cgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 379690 - 379794
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaa 338  Q
    ||||||||||||| | ||||  ||  || ||||||||||||||||  || || ||||||||||||||||||||||||| | ||||  |||| ||||||||    
T  379690 gtcttcgcggtggaacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaa 379789  T
Q  339 agtga 343  Q
    |||||    
T  379790 agtga 379794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 121075 - 121024
Alignment:
Q  292 aagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||||||||    
T  121075 aagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 121024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 11003 - 10928
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||| |||||||||||||| |||||||||||| | ||| | ||||  |||| |||||||||||||    
T  11003 aggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 22890 - 22964
Alignment:
Q  269 ggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||   |||||||||||||||||||||||||||||   | ||||  |||| |||||||||||||    
T  22890 ggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtga 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 10835 - 10758
Alignment:
Q  239 gtcttcgcggtgggatgaaaaatgtctcgaggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaaga 316  Q
    ||||||| ||||| ||||||  |||||  ||||| ||||||||| | ||| |||||||||||||||||||||||||||    
T  10835 gtcttcgtggtggaatgaaaggtgtctgtaggcatgttagcactccgacgttcaagtcagtaatggaactgagaaaga 10758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 35256 - 35336
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtg-aaaagtgaatca 347  Q
    |||||||||||||||   || ||||||||||||| |||||||||||||| | ||| |||||| ||||| ||||||||||||    
T  35256 aggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaaagtgaatca 35336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 40799 - 40874
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    ||||||||||||||| |||||||||||||||| |||||||||| | |||   ||||| |||| || ||||||||||    
T  40799 aggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtga 40874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 29358 - 29287
Alignment:
Q  274 gttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtgaatca 347  Q
    ||||||||| |||||||||||||||||||| || | || ||||   |||||||||| |||||||||||||||||    
T  29358 gttagcactccaacgctcaagtcagtaatgaaaataaggaaga--gtgtagaaagtgttgtgaaaagtgaatca 29287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 215275 - 215349
Alignment:
Q  268 aggcacgttagcacttcaacgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtg 342  Q
    ||||||||||||| | |||||||||||||||||||| |||||| | ||| | ||||  |||| ||||||||||||    
T  215275 aggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 20567 - 20510
Alignment:
Q  286 acgctcaagtcagtaatggaactgagaaagaatatgtagaaagtattgtgaaaagtga 343  Q
    |||||||||||| ||| |||||||||||||| | |||||||| | || ||||||||||    
T  20567 acgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtga 20510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 4510 - 4470
Alignment:
Q  270 gcacgttagcacttcaacgctcaagtcagtaatggaactga 310  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  4510 gcacgttagcactccaacgctcaagtcactaatgaaactga 4470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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