View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_24 (Length: 364)
Name: NF5589_low_24
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 46031803 - 46031467
Alignment:
| Q |
13 |
catcagatggaatacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatat |
112 |
Q |
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| T |
46031803 |
catcagatggaatacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatat |
46031704 |
T |
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| Q |
113 |
tatgtgtggtattatgattctttatttggttgtttgatacttttgacattaatgttgtatatgannnnnnnggctttgggaaaatagaaaataggcaaga |
212 |
Q |
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| T |
46031703 |
tatgtgtggtattatgattctttatttggttgtttgatacttttgacattaatgttgtatatgatttttttggctttgggaaaatagaaaataggcaaga |
46031604 |
T |
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| Q |
213 |
ttgcaaggaattcatggaatacaattgttgcacatgctaaagattgtgatgtagatgatgatgatgagcgctacagctattacacaactgaacgaccaat |
312 |
Q |
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| T |
46031603 |
ttgcaaggaattcatggaatacaattgttgcacatgctaaagattgtgatgtagacaatgatgatgagcgctacatctattactcaactgaacaaccaat |
46031504 |
T |
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| Q |
313 |
atcgttccttgtctttaatgcaatttttaaggttgtg |
349 |
Q |
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| T |
46031503 |
atcgttccttgtctttaatgcaatttataaggttgtg |
46031467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 349
Target Start/End: Complemental strand, 46018988 - 46018826
Alignment:
| Q |
184 |
ggctttgggaaaatagaaaataggcaagattgcaaggaattcatggaatacaattgttgcacatgctaaagattgtgatgtagatgatgatgatgagcgc |
283 |
Q |
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| T |
46018988 |
ggctttgggaaaatagaaaatagacaagactggtgggaagttatggaagaaaattattgcacatgctaaacattgtgatgtagatgatgatgg---gtgc |
46018892 |
T |
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| Q |
284 |
tacagctattacacaactgaacgaccaatatcgttccttgtctttaatgcaatttttaaggttgtg |
349 |
Q |
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| T |
46018891 |
tacatctattatgtaacagaacaaccaatatcctcccttgtctttaattcaattttaaaggttgtg |
46018826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 46019162 - 46019065
Alignment:
| Q |
18 |
gatggaatacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattat |
115 |
Q |
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| T |
46019162 |
gatggaatacacactattaaggattttttgcagctgttgataactaatgaagattcattaagaaatgtaagaaaatatactgttgtttgaaatattat |
46019065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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