View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589_low_27 (Length: 337)

Name: NF5589_low_27
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589_low_27
NF5589_low_27
[»] scaffold0091 (3 HSPs)
scaffold0091 (8-123)||(29057-29173)
scaffold0091 (186-273)||(28907-28994)
scaffold0091 (201-273)||(24710-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (8-122)||(14378-14493)
scaffold0218 (186-273)||(14227-14314)
[»] chr3 (9 HSPs)
chr3 (8-120)||(16642300-16642413)
chr3 (8-121)||(4712799-4712913)
chr3 (8-123)||(14062777-14062893)
chr3 (8-123)||(14055036-14055152)
chr3 (199-273)||(16642123-16642197)
chr3 (199-273)||(4712995-4713069)
chr3 (19-119)||(13926858-13926960)
chr3 (199-267)||(14062981-14063049)
chr3 (200-273)||(14055221-14055294)
[»] chr6 (4 HSPs)
chr6 (8-123)||(14989374-14989490)
chr6 (8-121)||(14980262-14980376)
chr6 (199-273)||(14980458-14980532)
chr6 (86-123)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (8-123)||(51658661-51658777)
chr1 (16-123)||(13882243-13882351)
chr1 (199-273)||(13882462-13882536)
chr1 (202-273)||(51658854-51658925)
chr1 (15-108)||(1567069-1567166)
[»] chr7 (9 HSPs)
chr7 (8-123)||(48376787-48376903)
chr7 (8-123)||(16060512-16060628)
chr7 (186-273)||(16060364-16060449)
chr7 (200-273)||(9080196-9080269)
chr7 (211-273)||(48376627-48376689)
chr7 (19-123)||(4531759-4531865)
chr7 (211-273)||(16069015-16069077)
chr7 (86-123)||(9080338-9080375)
chr7 (91-123)||(37946032-37946064)
[»] chr8 (6 HSPs)
chr8 (8-123)||(23658526-23658650)
chr8 (212-273)||(23657638-23657699)
chr8 (8-123)||(23657751-23657885)
chr8 (212-273)||(23658413-23658474)
chr8 (211-273)||(17862251-17862313)
chr8 (19-54)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (8-100)||(1-94)
[»] scaffold0063 (2 HSPs)
scaffold0063 (186-273)||(28443-28528)
scaffold0063 (85-123)||(28342-28380)
[»] scaffold0003 (2 HSPs)
scaffold0003 (49-123)||(130795-130870)
scaffold0003 (199-273)||(130623-130697)
[»] scaffold0319 (1 HSPs)
scaffold0319 (8-77)||(13569-13638)
[»] scaffold0061 (1 HSPs)
scaffold0061 (199-273)||(18097-18171)
[»] chr2 (1 HSPs)
chr2 (19-123)||(23656470-23656576)
[»] scaffold1043 (1 HSPs)
scaffold1043 (211-273)||(1432-1494)
[»] chr4 (2 HSPs)
chr4 (216-273)||(19728457-19728514)
chr4 (33-102)||(3576240-3576311)
[»] chr5 (3 HSPs)
chr5 (216-273)||(24832209-24832266)
chr5 (211-268)||(25756788-25756845)
chr5 (211-268)||(25790956-25791013)


Alignment Details
Target: scaffold0091 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 29173 - 29057
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  29173 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 29074  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  29073 atgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 28994 - 28907
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 28907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 24782 - 24710
Alignment:
Q  201 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 24710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 14493 - 14378
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14493 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14394  T
Q  107 atgttagtgatgatga 122  Q
    ||||||||||||||||    
T  14393 atgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 14314 - 14227
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtctaatatacat 14227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 16642413 - 16642300
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  16642413 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 16642314  T
Q  107 atgttagtgatgat 120  Q
    ||||||||||||||    
T  16642313 atgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 4712799 - 4712913
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  4712799 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 4712898  T
Q  107 atgttagtgatgatg 121  Q
    |||||||||||||||    
T  4712899 atgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 14062777 - 14062893
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  14062777 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14062876  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||| ||||||||    
T  14062877 atgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 14055036 - 14055152
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  14055036 agagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14055135  T
Q  107 atgttagtgatgatgag 123  Q
    ||||||||||| |||||    
T  14055136 atgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 16642197 - 16642123
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16642123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 4712995 - 4713069
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtctaatatacat 4713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  117 tga 119  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 14062981 - 14063049
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaat 267  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 14055221 - 14055294
Alignment:
Q  200 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtctaatatacat 14055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 14989374 - 14989490
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14989374 agagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14989473  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  14989474 atgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 14980262 - 14980376
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  14980262 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14980361  T
Q  107 atgttagtgatgatg 121  Q
    |||||||||||||||    
T  14980362 atgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 14980458 - 14980532
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 14980532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  86 atgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 51658661 - 51658777
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  51658661 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttat 51658760  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  51658761 atgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  16 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 114  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  115 gatgatgag 123  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 13882462 - 13882536
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 13882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 51658854 - 51658925
Alignment:
Q  202 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgatatctaatatacat 51658925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  15 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 108  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 48376903 - 48376787
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  48376903 agagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 48376804  T
Q  107 atgttagtgatgatgag 123  Q
    |||||| ||||||||||    
T  48376803 atgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 16060628 - 16060512
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  16060628 agagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttat 16060529  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  16060528 atgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 16060449 - 16060364
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16060364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 9080269 - 9080196
Alignment:
Q  200 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 9080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 48376689 - 48376627
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtctaatatacat 48376627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  117 tgatgag 123  Q
    |||||||    
T  4531859 tgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 16069015 - 16069077
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtctaatatacat 16069077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  86 atgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  91 aaatgataatgtttatatgttagtgatgatgag 123  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 23658650 - 23658526
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgata 98  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| |||    
T  23658650 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattata 23658551  T
Q  99 atgtttatatgttagtgatgatgag 123  Q
    |||||||||||||||||||||||||    
T  23658550 atgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 23657699 - 23657638
Alignment:
Q  212 gactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 23657885 - 23657751
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatatta------------------tatacatgtaatt-aataaatacgatg 88  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  |||| |||||||| |||||||||||||    
T  23657885 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatg 23657786  T
Q  89 agaaatgataatgtttatatgttagtgatgatgag 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  23657785 agaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 23658474 - 23658413
Alignment:
Q  212 gactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtctaatatacat 23658413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 17862251 - 17862313
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtctaatatacat 17862313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacga 54  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 94 - 1
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 100  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  94 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 28443 - 28528
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtctaatatacat 28528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  85 gatgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  49 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 130697 - 130623
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 130623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13569 - 13638
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 77  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13569 agagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 18097 - 18171
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||| ||| ||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatggtatctaatatacat 18171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  117 tgatgag 123  Q
    | |||||    
T  23656570 taatgag 23656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 1432 - 1494
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtctaatatacat 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 19728457 - 19728514
Alignment:
Q  216 atgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtctaatatacat 19728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  33 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 102  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 24832209 - 24832266
Alignment:
Q  216 atgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 273  Q
    |||||||||| || |||||||||||||||||| |||||||||| |  |||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgattcctaatatacat 24832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 25756788 - 25756845
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaata 268  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcaaata 25756845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 25791013 - 25790956
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaata 268  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcgaata 25790956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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