View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_28 (Length: 329)
Name: NF5589_low_28
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 9367102 - 9367394
Alignment:
| Q |
12 |
catcacaacatctctattttaggtcatttatctttttccttcttttttataagtataaatggtagaaaattattcatgtcttgattgagatttaagaggt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9367102 |
catcacaacatctctattttaggtcatttatctttttccttcttttttataagtataaatggtagaaaattattcatgtcttgattgagatttaagaggt |
9367201 |
T |
|
| Q |
112 |
ataattatcaatacttgttaattgttatgcttcatatcctaattaccatttgccaaacgtttcttccattcacagtctattcatgtta-nnnnnnncttt |
210 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9367202 |
ataatta----------ttaattgttatgcttcatatcctaattaccatttgccaaacgtttcttccattcacagtctattcatgttattttttttcttt |
9367291 |
T |
|
| Q |
211 |
tcatgaagtctaaagctaccctcacttgcttgctcccactgtatgctaggtgtgtaataaccttctgtttgctattatttacatcctgaaaagatcctcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9367292 |
tcatgaagtctaaagctaccctcacttgcttgctcccactgtatgctaggtgactgataaccttctgtttgctattatttacatcctgaaaagatcctcc |
9367391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 47509345 - 47509299
Alignment:
| Q |
17 |
caacatctctattttaggtcatttatctttttccttcttttttataa |
63 |
Q |
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| T |
47509345 |
caacatctctattttaggtcatctcactttttccttcttttttataa |
47509299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 1256822 - 1256691
Alignment:
| Q |
9 |
catcatcac-aacatctctatttt--aggtcatttatctttttccttcttttttataagtataaatggtagaaaattattcatgtcttgattgagattta |
105 |
Q |
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| T |
1256822 |
catcatcaccaacatctctattttttaggtcatctctctttttccttcatttttat--gtataaatggtagaaagttattcatgttttgattgaaattta |
1256725 |
T |
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| Q |
106 |
agaggtataattatcaatacttgttaattgttat |
139 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
1256724 |
agaggtataattatcaataattgttaattgttat |
1256691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 8328544 - 8328496
Alignment:
| Q |
262 |
gtgtaataaccttctgtttgctattatttacatcctgaaaagatcctcc |
310 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
8328544 |
gtgtaataaccctctgtttgctgttatttacatcctgaaaagatcctcc |
8328496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 31235278 - 31235337
Alignment:
| Q |
20 |
catctctattttaggtcatttatctttttccttcttttttataagtataaatggtagaaa |
79 |
Q |
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|||||||||||||||| || | ||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
31235278 |
catctctattttaggtaatctctctttttccttctcttttatatgtataaatggtagaaa |
31235337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 12287434 - 12287508
Alignment:
| Q |
20 |
catctctattttaggtcatttatctttttccttcttttttataagtataaatggtagaaaattattcatgtcttga |
95 |
Q |
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||||||||||| |||| || | ||||||||||||||||||||| || ||||||||||||||||||| | ||||||| |
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| T |
12287434 |
catctctattt-aggtaatctctctttttccttcttttttatatgtttaaatggtagaaaattatttaggtcttga |
12287508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 25958245 - 25958203
Alignment:
| Q |
82 |
tattcatgtcttgattgagatttaagaggtataattatcaata |
124 |
Q |
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|||| ||||| |||||||||||| ||||||||||||||||||| |
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| T |
25958245 |
tatttatgtcctgattgagatttgagaggtataattatcaata |
25958203 |
T |
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