View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_29 (Length: 325)
Name: NF5589_low_29
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 3417546 - 3417248
Alignment:
| Q |
20 |
ttgattcttttaaaaactactcttgtataaattttctgaatctatccatcgaaacattgagaaaagctcgttttatgggcttcaacataattgtaggata |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3417546 |
ttgattcttttaaaaactactcctgtataaattttctgaatctatccatcgaaacattgagaaaaactcgttttatgggcttcaacataattgtaggata |
3417447 |
T |
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| Q |
120 |
ttgaggaaaaataggaaaggtgtggcttnnnnnnnntagtgggtggtataagcatattgaggaaaaacaatatagagatttcaatgagattttagtttta |
219 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417446 |
ttgaggaaaaataggaaaggtgtggcttaaaaaaaatagtgggtggtataagcatattgaggaaaaacaatatagagatttcaatgagattttagtttta |
3417347 |
T |
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| Q |
220 |
tgggccttacaagttaaatgggtactagagagcccataataagtaccttactataattattttttaggttatttcttttctgaccctcctttcttctca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417346 |
tgggccttacaagttaaatgggtactagagagcccataataagtaccttactataattattttttaggttatttcttttctgaccctcctttcttctca |
3417248 |
T |
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