View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_low_3 (Length: 619)
Name: NF5589_low_3
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 47436044 - 47435702
Alignment:
| Q |
21 |
aaacgatgtagatgtagtgggttcctcctctaaatttggtcaaatgcctacacctgcatttgaaataggaagtaatagtgacatatcttcaagcatgata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47436044 |
aaacgatgtagatgtagtgggttcctcctctaaaattggtcaaatgcctacacctgcatttgaaataggaagtaatagtgacatatcttcaagcatgata |
47435945 |
T |
|
| Q |
121 |
gaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtagaacttgctgtggtttctatgg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47435944 |
gaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtagaacttgctgtggtttctatgg |
47435845 |
T |
|
| Q |
221 |
aggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctgaatacgttagggttttccccaa |
320 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47435844 |
aggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctgaatacgttagggttttccccaa |
47435745 |
T |
|
| Q |
321 |
tggaataagtccgaaactcatggggttaaaatctgaatcttca |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47435744 |
tggaataagtccgaaactcatggggttaaaatctgaatcttca |
47435702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University