View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_31 (Length: 309)
Name: NF5589_low_31
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 8993723 - 8994002
Alignment:
| Q |
14 |
gagtatgttagcaatgcctactcccacttgtttttgaccaaaaaacctttcatactcacactcaaaaacatgaagaagtaagttagcaagttttctctca |
113 |
Q |
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| T |
8993723 |
gagtatgttagcaatgcctactcccacttgtttttgaccaaaaaacctttcatactcacactcaaaaacatgaaggagtaagttagcaagttttctctca |
8993822 |
T |
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| Q |
114 |
ctttgggagtaagttagcaaatctactctcaatttaggagtaagttaacaaatctactcccactttaagagtatgttagcaagcctacttccgtttaatt |
213 |
Q |
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| T |
8993823 |
ctttgggagtaagttagcaaatctactctcaatttaggagtaagttaacaagtctattcccactttaagagtatgttagcaagcctactcctgtttaatt |
8993922 |
T |
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| Q |
214 |
ttagatagattgaattgatttttcagtaataatatgtgtgcgagttggtttgataacttactcccaagtgaggctatata |
293 |
Q |
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| T |
8993923 |
ttagatagattgaattgatttttcaataataatatgtgtgagagttggtttgataacttactcccaagtgaggctttata |
8994002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 9011850 - 9011983
Alignment:
| Q |
14 |
gagtatgttagcaatgcctactcccacttgtttttgaccaaaaaacctttcatactcacactcaaaaacatgaagaagtaagttagcaagt----tttct |
109 |
Q |
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| T |
9011850 |
gagtaagttagcaa-gtctactcccacttagtttttaccaaaaaacctttcatactcccactcaaaaacatgaagggataagttagcaagtctagctact |
9011948 |
T |
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| Q |
110 |
ctcactttgggagtaagttagcaaatctactctca |
144 |
Q |
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| T |
9011949 |
ctcactttgagagtaagttagtaagcctactctca |
9011983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 39015535 - 39015468
Alignment:
| Q |
66 |
tactcacactcaaaaacatgaagaagtaagttagcaagttttctctcactttgggagtaagttagcaa |
133 |
Q |
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| T |
39015535 |
tactcccacccaaaatcatgaaggagtaagttagcaagtctactcccactttgggagtaagttagcaa |
39015468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 39015514 - 39015466
Alignment:
| Q |
149 |
aggagtaagttaacaaatctactcccactttaagagtatgttagcaagc |
197 |
Q |
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| T |
39015514 |
aggagtaagttagcaagtctactcccactttgggagtaagttagcaagc |
39015466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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