View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_low_32 (Length: 292)
Name: NF5589_low_32
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 43166517 - 43166251
Alignment:
| Q |
18 |
agaacctccttagaatcttatgacagggcaaatgaggttcaatttgcgcacaactacaaccaccaaaatttacatttcaagcaaacactcaatttgctaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43166517 |
agaacctccttagaatcttatgacagggcaaatgaggttcaatttgcgcacaactacaaccaccaaaatttacatttcaagcaaacactcaatttgctaa |
43166418 |
T |
|
| Q |
118 |
ttcctcaatttaagagccactaccactaacaataaccttacatacaccatctaaaaagcagttttcaaaataagataaggcactatcaacatgaaacaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43166417 |
ttcctcaatttaagagccactaccactaacaataaccttacatacaacatctaaaaagcaattttcaaaataagataaggaactatcaacatgaaacaca |
43166318 |
T |
|
| Q |
218 |
tcgattgtccgagacattattgttacaatattcattgtaaccaaaacatctgatcccacgattgtct |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43166317 |
tcgattgtccgagacattattgttacaatattcattgtaaccaaaacatctgatcccacgattgtct |
43166251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 43175300 - 43175227
Alignment:
| Q |
60 |
tttgcgcacaactacaaccaccaaaatttaca-tttcaagcaaacactcaatttgctaattcctcaatttaaga |
132 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||| ||||||||| ||||||||||||| |||| ||||||| |||| |
|
|
| T |
43175300 |
tttgctcacaactacaacaaccaaaaattacaatttcaagcacacactcaatttgcaaatttctcaattgaaga |
43175227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University