View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589_low_35 (Length: 247)

Name: NF5589_low_35
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589_low_35
NF5589_low_35
[»] chr4 (3 HSPs)
chr4 (152-231)||(1328246-1328325)
chr4 (18-111)||(1328326-1328420)
chr4 (4-54)||(4878917-4878968)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 1328325 - 1328246
Alignment:
Q  152 ctactagaagctgacaattctagcttcacaaattcacggtaaaatgacatgctaaacgtacatctaacactagaaaagct 231  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  1328325 ctactagaagctgaaaattctagcttcacaaattcacggtaaaatgacatgctaaacgtatgtctaacactagaaaagct 1328246  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 1328420 - 1328326
Alignment:
Q  18 atatatctacagccttgcataatggaattgcagtgagg-tggnnnnnnntcatctacaagatagcagaatgtgagcagcagtaatttacacaaat 111  Q
    |||||||||||||| ||||||||||||||||||||||| ||        ||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  1328420 atatatctacagccatgcataatggaattgcagtgaggttgaaaaaaaatcatctacaagatagaagaatgtgagcggcagtaattaacacaaat 1328326  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 4878968 - 4878917
Alignment:
Q  4 aaacaagccaa-aacatatatctacagccttgcataatggaattgcagtgag 54  Q
    ||||||||||| |||||||| |||||||| |||||||||||| |||||||||    
T  4878968 aaacaagccaacaacatatacctacagccatgcataatggaactgcagtgag 4878917  T

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