View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_low_38 (Length: 239)
Name: NF5589_low_38
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_38 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 28608046 - 28607812
Alignment:
| Q |
5 |
tggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608046 |
tggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgag |
28607947 |
T |
|
| Q |
105 |
tttcaatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaa |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28607946 |
tttcaatccactgccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaa |
28607847 |
T |
|
| Q |
205 |
atcaacccgtatacaaatgcaccaacaacgtcatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607846 |
atcaacccgtatacaaatgcaccaacaacgtcatg |
28607812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 7589668 - 7589741
Alignment:
| Q |
137 |
ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacc |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
7589668 |
ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaacc |
7589741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 438861 - 439091
Alignment:
| Q |
9 |
aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttc |
108 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| ||| |||| ||| |||||| || | ||||||||| |
|
|
| T |
438861 |
aaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagtttt |
438960 |
T |
|
| Q |
109 |
aatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatca |
208 |
Q |
| |
|
||||| | ||| |||||| || ||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
438961 |
gatccattgccacaaaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatca |
439060 |
T |
|
| Q |
209 |
acccgtatacaaatgcaccaacaacgtcatg |
239 |
Q |
| |
|
||||||||| ||| || |||||||| ||||| |
|
|
| T |
439061 |
acccgtataaaaaagccccaacaacatcatg |
439091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 13651801 - 13651719
Alignment:
| Q |
139 |
agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaa |
221 |
Q |
| |
|
|||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13651801 |
agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaa |
13651719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 13659293 - 13659194
Alignment:
| Q |
133 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa |
232 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
13659293 |
ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 13659417 - 13659349
Alignment:
| Q |
9 |
aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttgg |
77 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | ||||| |||||| | |||||| ||||||||| |||| |
|
|
| T |
13659417 |
aaacaaagtgcttaaaatcttcggaacacataacaagattataataacaagtgttaagggccaagttgg |
13659349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University