View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_4 (Length: 607)
Name: NF5589_low_4
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_4 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 43102792 - 43102195
Alignment:
| Q |
1 |
aaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccattcccatttccttcatgtggcttaacatgtcacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102792 |
aaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccattcccatttccttcatgtggcttaacatgtcacaaa |
43102693 |
T |
|
| Q |
101 |
tcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctctccctgatctcatcacaaattcattcatccaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102692 |
tcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctctccctgatctcatcacaaattcattcatccaccc |
43102593 |
T |
|
| Q |
201 |
tatacgtatttaccttcgtgcacagggaatcactcgcccagttacattagcctcacttgctggcactctcctccatcttcctctaaattacttgtttgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102592 |
tatacgtatttaccttcgtgcacagggaatcactcgcccagttacattagcctcacttgctggcactctcctccatcttcctctaaattacttgtttgtc |
43102493 |
T |
|
| Q |
301 |
tttcacttcggtttcaccggagttccagctgcctctgcagcctccaacctcttcattgtgttgttcctcatcgcttatgtttggttaacgggcttacacc |
400 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43102492 |
tttcacttcggtttcaccggagtcccagctgcctctgcagcctccaacctcttcattgtattgttcctcatcgcttatgtttggttaacgggcttacacc |
43102393 |
T |
|
| Q |
401 |
gcacaacttggacagcaccaagccaggagtgtctcaccggctggaagcctttactccgacttgccacgccaagctgcgtttccgtttgtttggaatggtg |
500 |
Q |
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| T |
43102392 |
gcacaacttggacagcaccaagtcaggagtgtctcaccggctggaagcctttactccgacttgccacgccaagctgcgtttccgtttgtttggaatggtg |
43102293 |
T |
|
| Q |
501 |
gtggtatgaagtaatgatcattttatgtggtttacttgtggaccccaccgtaaccattgcttctatcgggattctaattcaaactacttcattcattt |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102292 |
gtggtatgaagtaatgatcattttatgtggtttacttgtggaccccaccgttaccattgcttctatcgggattctaattcaaactacttcattcattt |
43102195 |
T |
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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 24241 - 24282
Alignment:
| Q |
469 |
ccaagctgcgtttccgtttgtttggaatggtggtggtatgaa |
510 |
Q |
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| T |
24241 |
ccaagctgcgtttctgtctgcttggaatggtggtggtatgaa |
24282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 530
Target Start/End: Original strand, 51874979 - 51875031
Alignment:
| Q |
478 |
gtttccgtttgtttggaatggtggtggtatgaagtaatgatcattttatgtgg |
530 |
Q |
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||||| |||||||| |||||||||||||||||| | ||||| ||||| ||||| |
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| T |
51874979 |
gtttctgtttgtttagaatggtggtggtatgaactcatgataattttgtgtgg |
51875031 |
T |
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