View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_40 (Length: 228)
Name: NF5589_low_40
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_40 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0237 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36219698 - 36219921
Alignment:
| Q |
1 |
tttgtttatttcaacggttgagatttgttacctgttaactttttgactggtctatcaaacaaaaatcgtgaccccagctcataattaataaataaccttt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
36219698 |
tttgtttatttcaacggttgagatttgttacctattaactttttgactggtctatcaaacaaaaatcgtgaccccacctcataat---taaataaccttt |
36219794 |
T |
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| Q |
101 |
tctcatttgtttgaagtagtgagnnnnnnnnngcaaaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaaccatgttcacaatt |
200 |
Q |
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| T |
36219795 |
tctcatttgtttaaagtactgag-ttttttttgcaaaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaaccatgttcacaatt |
36219893 |
T |
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| Q |
201 |
tgcttcctgaaaaatgtattgttgtcgt |
228 |
Q |
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| T |
36219894 |
tgcttcctgaaaaatgcattgttgtcgt |
36219921 |
T |
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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 43469665 - 43469872
Alignment:
| Q |
15 |
cggttgagatttgttacctgttaactttttgactggtctatcaaacaaaaatcgtgaccccagctcataattaataaataaccttttctcatttgtttga |
114 |
Q |
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| T |
43469665 |
cggttgagatttgttacctgttaactttttgactggtctatcaaacaaaaagtgtgatcccacctcataattaa---ataacattttctcatttatttga |
43469761 |
T |
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| Q |
115 |
agtagtgagnnnnnnnnngcaaaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaaccatgttcacaatttgcttcctgaaaaa |
214 |
Q |
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| T |
43469762 |
agtagtgagtttttttttgcaaaaaagttatggactttttacgccccctctctgattgagaaataatgaaaaccatgtttacaatttgctttctgaaaaa |
43469861 |
T |
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| Q |
215 |
tgtattgttgt |
225 |
Q |
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| T |
43469862 |
tgcattgttgt |
43469872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 3578 - 3761
Alignment:
| Q |
9 |
tttcaacggttgagatttgttacctgttaactttttgactggtctatcaaacaaaaatcgtgaccccagctcataattaataaataaccttttctcattt |
108 |
Q |
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| T |
3578 |
tttcaacggctgagatttgttacctgttaactttttgactggtctatcaaacaaaaattgtgaccccacctca----tattaaataaccttttctcattt |
3673 |
T |
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| Q |
109 |
gtttgaagtagtgagnnnnnnnnngcaaaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaaccatgttcacaa |
198 |
Q |
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| T |
3674 |
gtttgaagtagtgagttttttttgg--aaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaatcatgttcacaa |
3761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 29857376 - 29857559
Alignment:
| Q |
9 |
tttcaacggttgagatttgttacctgttaactttttgactggtctatcaaacaaaaatcgtgaccccagctcataattaataaataaccttttctcattt |
108 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||| |
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| T |
29857376 |
tttcaacggctgagatttgttacctgttaactttttgactggtctatcaaacaaaaattgtgaccccacctca----tattaaataaccttttctcattt |
29857471 |
T |
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| Q |
109 |
gtttgaagtagtgagnnnnnnnnngcaaaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaaccatgttcacaa |
198 |
Q |
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| T |
29857472 |
gtttgaagtagtgagttttttttgg--aaaaagttatgggctttttacgccccctctctgtttgagaaataatgaaaatcatgttcacaa |
29857559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 279645 - 279706
Alignment:
| Q |
28 |
ttacctgttaactttttgactggtc-tatcaaacaaaaatcgtgaccccagctcataattaa |
88 |
Q |
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||||||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||| |
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| T |
279645 |
ttacctgttaactttttgatgggttatataaaacaaaaattgtgaccccacctcataattaa |
279706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 7423586 - 7423647
Alignment:
| Q |
28 |
ttacctgttaactttttgactggtc-tatcaaacaaaaatcgtgaccccagctcataattaa |
88 |
Q |
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||||||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||| |
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| T |
7423586 |
ttacctgttaactttttgatgggttatataaaacaaaaattgtgaccccacctcataattaa |
7423647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 42545511 - 42545450
Alignment:
| Q |
28 |
ttacctgttaactttttgactggtc-tatcaaacaaaaatcgtgaccccagctcataattaa |
88 |
Q |
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||||||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||| |
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| T |
42545511 |
ttacctgttaactttttgatgggttatataaaacaaaaattgtgaccccacctcataattaa |
42545450 |
T |
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