View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589_low_43 (Length: 225)

Name: NF5589_low_43
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589_low_43
NF5589_low_43
[»] chr7 (1 HSPs)
chr7 (16-209)||(29622609-29622802)
[»] chr5 (8 HSPs)
chr5 (18-209)||(35371121-35371312)
chr5 (16-158)||(35377072-35377214)
chr5 (16-179)||(35367483-35367646)
chr5 (16-189)||(35426031-35426204)
chr5 (17-209)||(35411278-35411470)
chr5 (16-209)||(35755462-35755655)
chr5 (16-209)||(35386631-35386824)
chr5 (18-125)||(35437714-35437821)
[»] chr1 (2 HSPs)
chr1 (16-194)||(10419956-10420134)
chr1 (16-208)||(10415056-10415248)
[»] chr8 (3 HSPs)
chr8 (19-207)||(15294352-15294540)
chr8 (19-207)||(15474721-15474909)
chr8 (51-189)||(13564902-13565040)
[»] chr3 (1 HSPs)
chr3 (16-209)||(1154293-1154486)
[»] chr2 (5 HSPs)
chr2 (21-209)||(30626666-30626854)
chr2 (21-87)||(30663619-30663685)
chr2 (21-87)||(30672299-30672365)
chr2 (130-209)||(30663701-30663780)
chr2 (130-209)||(30672381-30672460)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 29622802 - 29622609
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  29622802 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgttttgtgagaatttaagcctacacaaatt 29622703  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622702 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 29622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 35371121 - 35371312
Alignment:
Q  18 ggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattct 117  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||| |||||  ||||||    
T  35371121 ggagatatctatagctttgggattcttctgttagagatgctcaccggaaagagaccaacagataacatgttttctgagagtctaagtctgcatgaattct 35371220  T
Q  118 gtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    | || ||||| |||||||||||||| ||||||||||| ||||| | ||| ||| |||||||||||||||||   ||||||||||||||||||    
T  35371221 gcaaaatgaaaattccagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgatacagggattgtggaaaac 35371312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 35377072 - 35377214
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    ||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||    
T  35377072 agggagatatctatagctatggaattcttctgttagagatgcttactggaaagagaccaacagataacatcttttgtgagaatctaagcttacacaaatt 35377171  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggat 158  Q
     ||||||||||| |||||||||||||||||||| |||||||||    
T  35377172 ttgtaagatgaaaattccagaaggaattcttgatatagtggat 35377214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 35367483 - 35367646
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    |||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||| ||||||||    
T  35367483 agggagatgtttacagctttgggattctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcgagaatcttagccttcacaaatt 35367582  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccattt 179  Q
    |||||||||||| ||||| | || ||||||||||||||||||||| | ||| ||||| ||||||    
T  35367583 ctgtaagatgaaaattcccgtagaaattcttgagatagtggattcacatttgcttatgccattt 35367646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 35426031 - 35426204
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    ||||||||||||| |||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||    
T  35426031 agggagatatctatagctatggaattgttctgttagagatgcttactggaaagagaccaacagataacatgttttatgagaatttaagtttacacaaatt 35426130  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatc 189  Q
    |||||||||||  ||||| ||||||||||||||  ||||||||||  | || |||||  |||||||||||||||    
T  35426131 ctgtaagatgagaattcctgaaggaattcttgatgtagtggattcatgcttgcttatgtcatttgctgaagatc 35426204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 35411278 - 35411470
Alignment:
Q  17 gggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattc 116  Q
    ||||||||||||||||||||| ||||||||  |||||||| |||||| ||||||||||||| ||||||  |||| ||||| | |||| || ||  |||||    
T  35411278 gggagatatctacagctttgggattcttctactagagatgttcactgcaaagagaccaacaaataacaacttttctgagagtctaagtctacatgaattc 35411377  T
Q  117 tgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    || || ||||| ||| |||||||||| ||||||||||| ||||| | ||| ||| |||||||||||||||||  |||||||||||||||||||    
T  35411378 tgcaaaatgaaaatttcagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgagacagggattgtggaaaac 35411470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 35755462 - 35755655
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    |||||||||| ||||||| ||| ||||| ||||| || ||||| || |||||||||||||||||||||||||||| ||||||| |||  || ||||||||    
T  35755462 agggagatatttacagctatgggattctgctgttggaaatgcttaccggaaagagaccaacagataacatgttttatgagaatctaactctacacaaatt 35755561  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    |||||||||||  ||||| |||| |||||||||| | || ||||||||||  ||||| ||||| | |||||||| |||| |  |||||||||||    
T  35755562 ctgtaagatgagaattcctgaagaaattcttgaggttgtagattcccgttgccttattccattggttgaagatcagacacgagttgtggaaaac 35755655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 35386631 - 35386824
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    |||||||||||||||||||||| ||||||||  |||||||| |||| ||||||||||||||| ||||||  |||| |||||  ||||| ||||| |||||    
T  35386631 agggagatatctacagctttgggattcttctactagagatgttcaccggaaagagaccaacaaataacaacttttctgagagattaagtctgcataaatt 35386730  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    ||| || || || |||||||||| ||| ||||||||||| ||||| |  || ||| | |||||||||||||||  ||  |||||||||||||||    
T  35386731 ctgcaaaataaaaattccagaagcaatccttgagatagtagattctcaattgctttttccatttgctgaagatgagatggggattgtggaaaac 35386824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 35437714 - 35437821
Alignment:
Q  18 ggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattct 117  Q
    |||||||| ||||||| ||| |||||  |||| |||||| | || | ||| | ||||||||| ||||||||||||||   | ||||||| |||||||| |    
T  35437714 ggagatatttacagctatggaattctattgttggagatgttaacagcaaaaaaaccaacagacaacatgttttgtgaaggtctaagcctacacaaattat 35437813  T
Q  118 gtaagatg 125  Q
    ||||||||    
T  35437814 gtaagatg 35437821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 10420134 - 10419956
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    |||||||| | ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||| |  ||||| | ||||| ||||||||    
T  10420134 agggagatgtttacagctttgggattctcttgttagagatgctcactggaaagagaccaacagataacatgtttagccagaatcttagccttcacaaatt 10420035  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggaca 194  Q
    |||||||||||| ||||| | || ||||||||||||||||||||| | ||| ||||| |||||| || |||||| ||||    
T  10420034 ctgtaagatgaaaattcctgtagaaattcttgagatagtggattcacatttgcttatgccatttcctaaagatcagaca 10419956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 10415248 - 10415056
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |  ||| || ||  ||||    
T  10415248 agggagatatctatagctttgggattcttctgttagagatgctcactggaaagagaccaacaaataacatgttttctgagagtcaaagtctacatgaatt 10415149  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaa 208  Q
    ||| || ||||| |||||||||||||| || |||||||| ||||| |  |||||| | |||||||| |||| |  ||| ||||||||||||||    
T  10415148 ctgcaaaatgaaaattccagaaggaatcctcgagatagtagattcacaattacttttgccatttgccgaagttgagacggggattgtggaaaa 10415056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 15294352 - 15294540
Alignment:
Q  19 gagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctg 118  Q
    ||||||||||||||| ||| ||||| ||||| || |||||||| ||||||||||||||| ||| |||||| ||||||||| |||| || || ||||| ||    
T  15294352 gagatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttg 15294451  T
Q  119 taagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaa 207  Q
    ||||||||| |||||||||||||||||||||||||||| ||| | ||  ||||| ||||| | |||||||| ||||  | |||||||||    
T  15294452 taagatgaaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaa 15294540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 15474721 - 15474909
Alignment:
Q  19 gagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctg 118  Q
    ||||||||||||||| ||| ||||| ||||| || |||||||| ||||||||||||||| ||| |||||| ||||||||| |||| || || ||||| ||    
T  15474721 gagatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttg 15474820  T
Q  119 taagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaa 207  Q
    ||||||||| |||||||||||||||||||||||||||| ||| | ||  ||||| ||||| | |||||||| ||||  | |||||||||    
T  15474821 taagatgaaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaa 15474909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 13564902 - 13565040
Alignment:
Q  51 gagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatgaagattccagaaggaattcttgaga 150  Q
    ||||||||||| |||||||||||||| |||| ||||||||  ||   | |||  || ||||| | |||||||||||| |||||||||||||| |||| ||    
T  13564902 gagatgctcaccggaaagagaccaacggatatcatgttttccgacggtctaaatctacacaattactgtaagatgaaaattccagaaggaatccttgcga 13565001  T
Q  151 tagtggattcccgtttacttataccatttgctgaagatc 189  Q
    ||||||||   ||||| ||||| |||||| | |||||||    
T  13565002 tagtggatcaacgtttgcttatgccatttacggaagatc 13565040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 1154293 - 1154486
Alignment:
Q  16 agggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaatt 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||  || ||||||||||||||||||||  || | ||    
T  1154293 agggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctatacgagtt 1154392  T
Q  116 ctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
     ||||| ||||| ||| | |||||||| ||||||||||| ||    ||||| ||||| || ||||  ||||||| |||||  ||||||||||||    
T  1154393 ttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtcgaagatcagacagaaattgtggaaaac 1154486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 30626666 - 30626854
Alignment:
Q  21 gatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgta 120  Q
    |||||||||||||  || |||||||| ||||| |||||||||||||| ||||||||| ||| |||||||| ||  | | | || || ||   ||||||||    
T  30626666 gatatctacagctacgggattcttctcttagaaatgctcactggaaaaagaccaacaaatagcatgttttctggaagtctcagtctacatgcattctgta 30626765  T
Q  121 agatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    |||||||  ||||||| |||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  |||||||||||||||||||    
T  30626766 agatgaaagttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaac 30626854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30663619 - 30663685
Alignment:
Q  21 gatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgt 87  Q
    |||||||||||||  || |||||||| ||||| |||||||||||||||||||||||| ||| |||||    
T  30663619 gatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgt 30663685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30672299 - 30672365
Alignment:
Q  21 gatatctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgt 87  Q
    |||||||||||||  || |||||||| ||||| |||||||||||||||||||||||| ||| |||||    
T  30672299 gatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgt 30672365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 30663701 - 30663780
Alignment:
Q  130 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    ||||||| |||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  |||||||||||||||||||    
T  30663701 ttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaac 30663780  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 30672381 - 30672460
Alignment:
Q  130 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaac 209  Q
    ||||||| |||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  |||||||||||||||||||    
T  30672381 ttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaac 30672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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