View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5589_low_45 (Length: 211)
Name: NF5589_low_45
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_45 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28607610 - 28607805
Alignment:
| Q |
1 |
attttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataattgcaaaagtc |
100 |
Q |
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| T |
28607610 |
attttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataatcgcaaaagtc |
28607709 |
T |
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| Q |
101 |
attaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattctt |
196 |
Q |
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| T |
28607710 |
attaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataactgatattctt |
28607805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 7589922 - 7589803
Alignment:
| Q |
50 |
atatttgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtct |
149 |
Q |
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| T |
7589922 |
atatttattttaatttgcatctttgtggtatattgtatcattgtcaaggccattgatcgcaagacaaaaagagattaatggaatgataaccaatatctct |
7589823 |
T |
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| Q |
150 |
ttgtggtgatgggacttttt |
169 |
Q |
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| T |
7589822 |
ttgtggtcatgggaattttt |
7589803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 439293 - 439110
Alignment:
| Q |
1 |
attttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataattgcaaaagtc |
100 |
Q |
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| T |
439293 |
attttcagttaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcatttccatctttgtggtgcatcctatcattgtaaaggtc |
439194 |
T |
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| Q |
101 |
attaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacata |
184 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||| |||| ||||| | ||||| ||| | |||||||||| |||| |
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| T |
439193 |
attgatcgcaagacagaaagagatgaatgggatgctaaccaactagtttttgtctttatgggccttatggttttctcattcata |
439110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 13659007 - 13659180
Alignment:
| Q |
23 |
gcaatatatccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagag |
122 |
Q |
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| T |
13659007 |
gcaatatactcagtgttaagcaccgtcatatttgttttcatttgcatttttctggtgcgtccgatcattgtaaagttcattgatcgcaagactgaaagag |
13659106 |
T |
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| Q |
123 |
atgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattctt |
196 |
Q |
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| T |
13659107 |
atgaatggaacgataaagaattactctttcttgtgatggggatttttgtttgctcatgcataacagatattctt |
13659180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 13651521 - 13651694
Alignment:
| Q |
23 |
gcaatatatccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagag |
122 |
Q |
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|||||||| |||||||||| || || ||||||||||||||||||| |||||||||| |||||| || | ||| |||||| |||||||| ||||||| |
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| T |
13651521 |
gcaatatactcagtgttaagtaccgtcgtatttgttttcatttgcatttttgtggtgcgtcctatcatcgtaaaggtcattgatcgcaagcttgaaagag |
13651620 |
T |
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| Q |
123 |
atgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattctt |
196 |
Q |
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| T |
13651621 |
atgaatgggatgataaacaattactctttcttctgatggggatgtttgtttgctcatatataacaggtattctt |
13651694 |
T |
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