View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5589_low_46 (Length: 211)

Name: NF5589_low_46
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5589_low_46
NF5589_low_46
[»] chr3 (1 HSPs)
chr3 (1-211)||(1154291-1154501)
[»] chr7 (1 HSPs)
chr7 (9-211)||(29622602-29622804)
[»] chr5 (6 HSPs)
chr5 (9-208)||(35411278-35411477)
chr5 (9-207)||(35371121-35371319)
chr5 (35-211)||(35377070-35377246)
chr5 (31-211)||(35367481-35367661)
chr5 (71-209)||(35386631-35386769)
chr5 (77-211)||(35426029-35426163)
[»] chr1 (1 HSPs)
chr1 (1-211)||(10415040-10415250)
[»] chr8 (3 HSPs)
chr8 (71-206)||(15294352-15294487)
chr8 (71-206)||(15474721-15474856)
chr8 (52-108)||(13564968-13565024)
[»] chr2 (2 HSPs)
chr2 (17-81)||(28160440-28160504)
chr2 (9-204)||(30626666-30626861)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1154501 - 1154291
Alignment:
Q  1 acactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1154501 acactttttaatcttgttttccacaatttctgtctgatcttcgacaaacggcataagcaaacgttggtcgactatctcaaggattccttcagaaattttc 1154402  T
Q  101 attttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttcagtagagcatctctaacagaagaaacccaaagctgtaga 200  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| ||||||||||||||    
T  1154401 attttacaaaactcgtataggcttaaattctcacaaaatatactattggttggtctctttccggtgagcatctctaacagaagaatcccaaagctgtaga 1154302  T
Q  201 tatctccctgt 211  Q
    |||||||||||    
T  1154301 tatctccctgt 1154291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 29622602 - 29622804
Alignment:
Q  9 taatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttaca 108  Q
    ||||||||||||||||||| |||||| |||||||  |||| |  ||||| |||||    || ||||||||||| |||||||||| ||| ||||| |||||    
T  29622602 taatcttgttttccacaatccctgtccgatcttcagcaaatggtataagtaaacgggaatccactatctcaagaattccttctggaatcttcatcttaca 29622701  T
Q  109 aaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctcttt-cagtagagcatctctaacagaagaaacccaaagctgtagatatctcc 207  Q
     || | |||||||||||||||||||||||| ||  |||  | |||||||||| |||| ||||||||||||||||||||  ||||||||||||||||||||    
T  29622702 gaatttgtgtaggcttaaattctcacaaaacatgttatctgctggtctctttccagt-gagcatctctaacagaagaatgccaaagctgtagatatctcc 29622800  T
Q  208 ctgt 211  Q
    ||||    
T  29622801 ctgt 29622804  T

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Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 35411477 - 35411278
Alignment:
Q  9 taatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttaca 108  Q
    ||||||||||||||||||| ||||||| ||||||  |||| |  | ||||||| ||   || ||||||||||||||||||||||||||||||||||| ||    
T  35411477 taatcttgttttccacaatccctgtctcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctgaaattttcattttgca 35411378  T
Q  109 aaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctcttt-cagtagagcatctctaacagaagaaacccaaagctgtagatatctcc 207  Q
     || || ||||| |||| | ||||| ||||  |  |||| |||||||||||| |||| || ||||||||  ||||||| |||||||||||||||||||||    
T  35411377 gaattcatgtagacttagactctcagaaaagttgttatttgttggtctctttgcagt-gaacatctctagtagaagaatcccaaagctgtagatatctcc 35411279  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 35371319 - 35371121
Alignment:
Q  9 taatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttaca 108  Q
    ||||||||||||||||||| ||||| | ||||||  |||| |  | ||||||| ||   || |||||||||||||||||||||| |||||||||||| ||    
T  35371319 taatcttgttttccacaatccctgtatcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctggaattttcattttgca 35371220  T
Q  109 aaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttcagtagagcatctctaacagaagaaacccaaagctgtagatatctcc 207  Q
     || || || || |||| | ||||| |||| ||  |||  ||||||||||||| |  |||||||||||||||||||| ||||||||| |||||||||||    
T  35371219 gaattcatgcagacttagactctcagaaaacatgttatctgttggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctcc 35371121  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 35377246 - 35377070
Alignment:
Q  35 tgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttacaaaaatcgtgtaggcttaaattctcac 134  Q
    |||||||| ||||| |||| |||||| | | | || ||||| ||||| |||||||||| ||||||||| |||||||| | ||||| ||||| ||||||||    
T  35377246 tgatcttcaacaaatgacacaagcaagcatggatccactatatcaagaattccttctggaattttcatcttacaaaatttgtgtaagcttagattctcac 35377147  T
Q  135 aaaatatactattggttggtctcttt-cagtagagcatctctaacagaagaaacccaaagctgtagatatctccctgt 211  Q
    |||| ||  |||  |||||||||||| ||||| |||||||||||||||||||  ||| |||| |||||||||||||||    
T  35377146 aaaagatgttatctgttggtctctttccagta-agcatctctaacagaagaattccatagctatagatatctccctgt 35377070  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 35367661 - 35367481
Alignment:
Q  31 tgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttacaaaaatcgtgtaggcttaaattc 130  Q
    |||||||||||  | ||| | |||||||||| ||   || ||||||||||| ||| || | | ||||||||| ||||| || | ||| ||||| | ||||    
T  35367661 tgtctgatctttaagaaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattc 35367562  T
Q  131 tcacaaaatatactattggttggtctcttt-cagtagagcatctctaacagaagaaacccaaagctgtagatatctccctgt 211  Q
    || ||||| || ||||  |||||||||||| |||| ||||||||||||||| |||| |||||||||||| | ||||||||||    
T  35367561 tcgcaaaacatgctatctgttggtctctttccagt-gagcatctctaacagtagaatcccaaagctgtaaacatctccctgt 35367481  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 35386769 - 35386631
Alignment:
Q  71 actatctcaaggattccttctgaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttcagtagagca 170  Q
    ||||||||||||||| |||||| |||||| ||||| || || |  || || |||||  ||||| ||||  |  |||| ||||||||||||| |  || ||    
T  35386769 actatctcaaggattgcttctggaatttttattttgcagaatttatgcagacttaatctctcagaaaagttgttatttgttggtctctttccggtgaaca 35386670  T
Q  171 tctctaacagaagaaacccaaagctgtagatatctccct 209  Q
    ||||||  ||||||| |||||||||||||||||||||||    
T  35386669 tctctagtagaagaatcccaaagctgtagatatctccct 35386631  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 35426163 - 35426029
Alignment:
Q  77 tcaaggattccttctgaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttc-agtagagcatctct 175  Q
    ||||| |||||||| | |||| |||| ||||| || | |||||  |||||||||||| |||| ||  |||  ||||||||||||| |||| |||||||||    
T  35426163 tcaagaattccttcaggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagta-agcatctct 35426065  T
Q  176 aacagaagaaacccaaagctgtagatatctccctgt 211  Q
    ||||||| ||  ||| |||| |||||||||||||||    
T  35426064 aacagaacaattccatagctatagatatctccctgt 35426029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10415040 - 10415250
Alignment:
Q  1 acactttttaatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttc 100  Q
    |||||| |||||||| ||||||||||| || |||| | ||||| |||| | || ||| ||  ||   || |||||||| ||||||||||||| |||||||    
T  10415040 acacttcttaatcttattttccacaatccccgtctcaacttcggcaaatggcaaaagtaattgtgaatctactatctcgaggattccttctggaattttc 10415139  T
Q  101 attttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttc-agtagagcatctctaacagaagaaacccaaagctgtag 199  Q
    ||||| || || || ||||| |||  | ||||| |||| ||  |||| ||||||||||||| ||| |||||||||||||||||||| ||||||||| |||    
T  10415140 attttgcagaattcatgtagactttgactctcagaaaacatgttatttgttggtctctttccagt-gagcatctctaacagaagaatcccaaagctatag 10415238  T
Q  200 atatctccctgt 211  Q
    ||||||||||||    
T  10415239 atatctccctgt 10415250  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 15294487 - 15294352
Alignment:
Q  71 actatctcaaggattccttctgaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttcagtagagca 170  Q
    ||||||||||| |||||||||| ||||||||| |||||||| |  ||||| |||| ||||||||| || || ||||| ||||||||||||| |  |||||    
T  15294487 actatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttggtctctttccggtgagca 15294388  T
Q  171 tctctaacagaagaaacccaaagctgtagatatctc 206  Q
    | || ||||| |||| |||| |||||||||||||||    
T  15294387 tttccaacagcagaatcccatagctgtagatatctc 15294352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 15474856 - 15474721
Alignment:
Q  71 actatctcaaggattccttctgaaattttcattttacaaaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctctttcagtagagca 170  Q
    ||||||||||| |||||||||| ||||||||| |||||||| |  ||||| |||| ||||||||| || || ||||| ||||||||||||| |  |||||    
T  15474856 actatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttggtctctttccggtgagca 15474757  T
Q  171 tctctaacagaagaaacccaaagctgtagatatctc 206  Q
    | || ||||| |||| |||| |||||||||||||||    
T  15474756 tttccaacagcagaatcccatagctgtagatatctc 15474721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 13565024 - 13564968
Alignment:
Q  52 cataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttaca 108  Q
    ||||||||||||||| || |||||| ||||||||||||||| ||||||||| |||||    
T  13565024 cataagcaaacgttgatccactatcgcaaggattccttctggaattttcatcttaca 13564968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 28160440 - 28160504
Alignment:
Q  17 ttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaag 81  Q
    ||||||||||||||||||||||||| | || ||| ||||||||||| |||||| |||||||||||    
T  28160440 ttttccacaattcctgtctgatcttggccatacggcataagcaaacattggtccactatctcaag 28160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 30626861 - 30626666
Alignment:
Q  9 taatcttgttttccacaattcctgtctgatcttcgacaaacgacataagcaaacgttggtcgactatctcaaggattccttctgaaattttcattttaca 108  Q
    ||||||||||||||||||| ||||||| ||||||  |||| | || ||||||| ||   || |||||||||| |||||| |||| || |||||| |||||    
T  30626861 taatcttgttttccacaatccctgtctcatcttcagcaaatggcaaaagcaaatgtgaatctactatctcaaagattccatctggaactttcatcttaca 30626762  T
Q  109 aaaatcgtgtaggcttaaattctcacaaaatatactattggttggtctcttt-cagtagagcatctctaacagaagaaacccaaagctgtagatatc 204  Q
     ||  | ||||| || | | |  || |||| || ||||| |||||||| ||| |||| |||||| ||||| ||||||| |||  |||||||||||||    
T  30626761 gaatgcatgtagactgagacttccagaaaacatgctatttgttggtctttttccagt-gagcatttctaagagaagaatcccgtagctgtagatatc 30626666  T

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