View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_low_6 (Length: 568)
Name: NF5589_low_6
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_6 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Complemental strand, 46240495 - 46239938
Alignment:
| Q |
1 |
aacatctcttcaaacacactcattagtccctgaaatattcaacaacaataatgttacaatattaatctatgatctatatattaattaaatacatgaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240495 |
aacatctcttcaaacacactcattagtccctgaaatattcaacaccaataatgttacaatattaatctatgatctatatattaattaaatacatgaaata |
46240396 |
T |
|
| Q |
101 |
gactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgc |
200 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240395 |
gactgacaacatttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgc |
46240296 |
T |
|
| Q |
201 |
cctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtcttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46240295 |
cctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtcttt |
46240196 |
T |
|
| Q |
301 |
agatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgta |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240195 |
agatgacaaccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacctgggttgta |
46240096 |
T |
|
| Q |
401 |
atcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatc |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240095 |
atcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatc |
46239996 |
T |
|
| Q |
501 |
agcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46239995 |
agcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttg |
46239938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 115 - 554
Target Start/End: Complemental strand, 23541775 - 23541336
Alignment:
| Q |
115 |
accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt |
214 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| | ||||||||||||| | | |||||||||||| ||||||||| |||| |||| |||| |
|
|
| T |
23541775 |
accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt |
23541676 |
T |
|
| Q |
215 |
caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc |
314 |
Q |
| |
|
| || || |||||||| | ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
23541675 |
ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc |
23541576 |
T |
|
| Q |
315 |
aaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggc |
414 |
Q |
| |
|
||||||| |||||| ||||| ||||| | || ||||| || |||||||||||||||||||| ||||| |||||||||||||| | | ||| ||| |
|
|
| T |
23541575 |
taccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggt |
23541476 |
T |
|
| Q |
415 |
ctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaa |
514 |
Q |
| |
|
||||| ||| | || |||| | ||||||| | ||| ||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||| |
|
|
| T |
23541475 |
ctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaa |
23541376 |
T |
|
| Q |
515 |
caattttctgagctatctgttttgctttccacgccctacc |
554 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
23541375 |
caatactctgagcaatctgttttgccttccaagccctacc |
23541336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 114 - 392
Target Start/End: Original strand, 30038134 - 30038412
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| | ||||||| ||||| || || ||||||||||| |
|
|
| T |
30038134 |
taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt |
30038233 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
313 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||||||||| || |||| || | || ||||||| |
|
|
| T |
30038234 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgacccccgtatcttgttttcaagtggcagccat |
30038333 |
T |
|
| Q |
314 |
caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacct |
392 |
Q |
| |
|
| || |||| ||| || || || || | | |||||||| || || ||||||||||| || |||||||| |||||||| |
|
|
| T |
30038334 |
ccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaacct |
30038412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 398
Target Start/End: Complemental strand, 34584859 - 34584674
Alignment:
| Q |
213 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca |
312 |
Q |
| |
|
||||||||| ||||| ||||||||| | || |||||||| | ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| ||| |
|
|
| T |
34584859 |
ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca |
34584760 |
T |
|
| Q |
313 |
tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
|| || || || || || ||||| ||||| ||||||| ||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
34584759 |
tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg |
34584674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 84 - 554
Target Start/End: Original strand, 3437067 - 3437537
Alignment:
| Q |
84 |
attaaatacatgaaatagactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg |
183 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437067 |
attaaatacatgaaatagactgacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg |
3437166 |
T |
|
| Q |
184 |
aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgac |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3437167 |
aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgac |
3437266 |
T |
|
| Q |
284 |
ccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaaga |
383 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3437267 |
caccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaaga |
3437366 |
T |
|
| Q |
384 |
tccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437367 |
tccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatc |
3437466 |
T |
|
| Q |
484 |
attgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437467 |
attgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc |
3437537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 14798952 - 14799118
Alignment:
| Q |
211 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
310 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
14798952 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
14799051 |
T |
|
| Q |
311 |
catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta |
377 |
Q |
| |
|
||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || ||||| |
|
|
| T |
14799052 |
catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta |
14799118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 15245944 - 15246110
Alignment:
| Q |
211 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
310 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
15245944 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
15246043 |
T |
|
| Q |
311 |
catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta |
377 |
Q |
| |
|
||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || ||||| |
|
|
| T |
15246044 |
catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta |
15246110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 114 - 398
Target Start/End: Complemental strand, 29878409 - 29878125
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
29878409 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
29878310 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
313 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||| |||||||| |||| || | || ||||||| |
|
|
| T |
29878309 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccatatcttgttttcaagtggcagccat |
29878210 |
T |
|
| Q |
314 |
caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
| || |||| ||| || || || || | | |||||||| || || ||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
29878209 |
ccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaaccttggttg |
29878125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 114 - 398
Target Start/End: Original strand, 3921199 - 3921483
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
3921199 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
3921298 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
313 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||| ||||| || |||| || | || ||||||| |
|
|
| T |
3921299 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgtcccccttatcttgttttcaagtggcagccat |
3921398 |
T |
|
| Q |
314 |
caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
| || |||| ||| || || || || | | |||||||| || || ||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
3921399 |
ccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaagacccaaaccttggttg |
3921483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 114 - 290
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||| ||||| || || || |||| |||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
6869201 |
taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt |
6869104 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
290 |
Q |
| |
|
||||| | ||||| || || |||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
6869103 |
tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata |
6869027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 398
Target Start/End: Original strand, 4497222 - 4497506
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | | ||| | |
|
|
| T |
4497222 |
taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact |
4497321 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
313 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || ||||| | || || |||| |
|
|
| T |
4497322 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttagtcttcaagtggcacccat |
4497421 |
T |
|
| Q |
314 |
caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
||||||| | ||| || |||||| || | | || ||| | ||||| |||||||| ||||||| ||||| ||||| || ||||| |
|
|
| T |
4497422 |
caacccccacaaaaggtctacatgcagctttgaatcctctcttgcatccatcaaaggaaaagtagaaagacccaaatcttggttg |
4497506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 401
Target Start/End: Original strand, 11318291 - 11318469
Alignment:
| Q |
223 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
322 |
Q |
| |
|
|||||||| | |||||| || || |||||||||||||| |||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
11318291 |
ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
11318390 |
T |
|
| Q |
323 |
taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa |
401 |
Q |
| |
|
|||| || |||||| | | ||| ||||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
11318391 |
taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa |
11318469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 398
Target Start/End: Complemental strand, 18289 - 18005
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || | |
|
|
| T |
18289 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact |
18190 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
313 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || || || | ||| || |||| |
|
|
| T |
18189 |
tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccat |
18090 |
T |
|
| Q |
314 |
caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
| ||||| | ||| || |||||| || | | |||||| | |||||||||||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
18089 |
ctacccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg |
18005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 398
Target Start/End: Original strand, 24676042 - 24676326
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || | |
|
|
| T |
24676042 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact |
24676141 |
T |
|
| Q |
214 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
313 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || || || | ||| || |||| |
|
|
| T |
24676142 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccat |
24676241 |
T |
|
| Q |
314 |
caaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
| ||||| | ||| || |||||| || | | |||||| | |||||||||||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
24676242 |
ctacccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg |
24676326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 40053 - 40153
Alignment:
| Q |
235 |
ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac |
334 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| | || ||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| |
|
|
| T |
40053 |
ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac |
40152 |
T |
|
| Q |
335 |
a |
335 |
Q |
| |
|
| |
|
|
| T |
40153 |
a |
40153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
| Q |
114 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
213 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| ||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
36915439 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt |
36915340 |
T |
|
| Q |
214 |
tcaa |
217 |
Q |
| |
|
|||| |
|
|
| T |
36915339 |
tcaa |
36915336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 398
Target Start/End: Complemental strand, 30964745 - 30964560
Alignment:
| Q |
213 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca |
312 |
Q |
| |
|
||||||||| ||||| ||||||||| | || |||||||| | ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| ||| |
|
|
| T |
30964745 |
ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca |
30964646 |
T |
|
| Q |
313 |
tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg |
398 |
Q |
| |
|
|| || || || || || ||||| ||||| ||||||| ||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
30964645 |
tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg |
30964560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 401
Target Start/End: Complemental strand, 43607 - 43429
Alignment:
| Q |
223 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
322 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
43607 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
43508 |
T |
|
| Q |
323 |
taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa |
401 |
Q |
| |
|
|||| || |||||| | | ||| ||||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
43507 |
taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa |
43429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 401
Target Start/End: Original strand, 18131561 - 18131739
Alignment:
| Q |
223 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
322 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
18131561 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
18131660 |
T |
|
| Q |
323 |
taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa |
401 |
Q |
| |
|
|||| || |||||| | | ||| ||||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
18131661 |
taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa |
18131739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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