View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5589_low_9 (Length: 527)
Name: NF5589_low_9
Description: NF5589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5589_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 44837677 - 44837183
Alignment:
| Q |
16 |
attgaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataaacctgttttagtagaagatatgttggaaatcaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837677 |
attgaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataaacctgttttagtagaagatatgttggaaatcaaag |
44837578 |
T |
|
| Q |
116 |
aggatgattttgaaattgaaaaggatgaagctgttgctgtttattctccatattttctaaggactttaatatcaaagcaagattgtatggaaaatttgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837577 |
aggatgattttgaaattgaaaaggatgaagctgttgctgtttattctccatattttctaaggactttaatatcaaagcaagattgtatggaaaatttgat |
44837478 |
T |
|
| Q |
216 |
gagggttttgagagatatcaaaccatgtataatgatagtacttgaaactgaagcaagtcttaattcgcagtcttttgtgaaccgattcgttgaagcgttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837477 |
gagggttttgagagatatcaaaccatgtataatgatagtacttgaaactgaagcaagtcttaattcgcagtcttttgtgaaccgattcgttgaagcgttg |
44837378 |
T |
|
| Q |
316 |
ttcttctactcggcttttttcgatatggctgaaacatgtatgagcgaggaggatgagtgtagaatgataacagaaggaatactatctgcagggataagaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
44837377 |
ttcttctactcggcttttttcgatatggctgaaacatgtatgagcgaggaggatgagtgtagaatgataacagaaggaatactatctgtagggttaagaa |
44837278 |
T |
|
| Q |
416 |
atattgttgcgtcagaaggtagagaaaggactgttagaaatgtgaaaattgatgtttggagaagattctttgcaaggtatagaatggtggaaact |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837277 |
atattgttgcgtcagaaggtagagaaaggactgttagaaatgtgaaaattgatgtttggagaagattctttgcaaggtatagaatggtggaaact |
44837183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 368 - 511
Target Start/End: Complemental strand, 38926804 - 38926661
Alignment:
| Q |
368 |
atgagtgtagaatgataacagaaggaatactatctgcagggataagaaatattgttgcgtcagaaggtagagaaaggactgttagaaatgtgaaaattga |
467 |
Q |
| |
|
||||||||||| | || | |||| |||| |||||| |||||||||||| ||||||| | |||| | |||||||| ||||| |||||||| ||||| |
|
|
| T |
38926804 |
atgagtgtagagtaatgatggaagcaatattatctgaagggataagaaacattgttggtttggaagatgaagaaaggaaggttaggaatgtgaagattga |
38926705 |
T |
|
| Q |
468 |
tgtttggagaagattctttgcaaggtatagaatggtggaaactg |
511 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38926704 |
tgtttggagaaggttctttgcaaggtatagaatggtggaaactg |
38926661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 38927153 - 38927092
Alignment:
| Q |
19 |
gaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataa |
80 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
38927153 |
gaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataa |
38927092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University