View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5590-Insertion-10 (Length: 411)
Name: NF5590-Insertion-10
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590-Insertion-10 |
 | |
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| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Complemental strand, 26120044 - 26119642
Alignment:
| Q |
8 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26120044 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttttgaaggagaaagcatgggaccaagtcgttttcaa |
26119945 |
T |
|
| Q |
108 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26119944 |
cgaggaactctttcatccatcatatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagcagagttcttttc |
26119845 |
T |
|
| Q |
208 |
aagacggtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
307 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26119844 |
aagacagtgaggaacaatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttg |
26119745 |
T |
|
| Q |
308 |
aatattatgttaatgggaaacaagaggctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtctaagctgttgttcaaaaacttaacg |
407 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
26119744 |
aatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttg-ttatgtctaagctgttgttcaaaaacttaacg |
26119646 |
T |
|
| Q |
408 |
agca |
411 |
Q |
| |
|
|||| |
|
|
| T |
26119645 |
agca |
26119642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Complemental strand, 26084482 - 26084077
Alignment:
| Q |
8 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||| ||||| |
|
|
| T |
26084482 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaagggtaatgcatgggaccaagccgttttcaa |
26084383 |
T |
|
| Q |
108 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084382 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
26084283 |
T |
|
| Q |
208 |
aagacggtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
307 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084282 |
aggacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
26084183 |
T |
|
| Q |
308 |
aatattatgttaatgggaaacaagaggctctcaaaccttttcccgatggcacacctcgataaccttgtt--tttgtctaagctgttgttcaaaaacttaa |
405 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| ||||||||| |
|
|
| T |
26084182 |
aatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaacttaa |
26084083 |
T |
|
| Q |
406 |
cgagca |
411 |
Q |
| |
|
| |||| |
|
|
| T |
26084082 |
ccagca |
26084077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 26096757 - 26096360
Alignment:
| Q |
8 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26096757 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaagcatgggaccaagtcgttttcaa |
26096658 |
T |
|
| Q |
108 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
207 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096657 |
cgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
26096558 |
T |
|
| Q |
208 |
aagacggtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
307 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
26096557 |
aggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttg |
26096458 |
T |
|
| Q |
308 |
aatattatgttaatgggaaacaagaggctctcaaaccttttcccgatggcacacctcgataaccttgtttt--tgtctaagctgttgttcaaaaactt |
403 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
26096457 |
aatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
26096360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 411
Target Start/End: Complemental strand, 26126701 - 26126296
Alignment:
| Q |
8 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||| ||||||||||||| ||| ||||| |
|
|
| T |
26126701 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggctgcacgactttcaaaagagaatgcatgggaccaaggcgttttcaa |
26126602 |
T |
|
| Q |
108 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
207 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
26126601 |
cgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagtaaagttcttttc |
26126502 |
T |
|
| Q |
208 |
aagacggtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
307 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26126501 |
aagacagtgaggaacgatgctaaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttg |
26126402 |
T |
|
| Q |
308 |
aatattatgttaatgggaaacaagaggctctcaaaccttttcccgatggcacacctcgataaccttgtt--tttgtctaagctgttgttcaaaaacttaa |
405 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||| | |||||||||||| |||||||||||| | ||||| || |||| |||||| |||||| |
|
|
| T |
26126401 |
aatactatgttaatgggaaccaagatgctctcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatacttaa |
26126302 |
T |
|
| Q |
406 |
cgagca |
411 |
Q |
| |
|
|||||| |
|
|
| T |
26126301 |
cgagca |
26126296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 26064757 - 26064408
Alignment:
| Q |
8 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaa |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||| ||| || || |
|
|
| T |
26064757 |
gtttcttctatattagaccaaccattccttcaattgagcttttggatcgtgtggcggcaaggctttccaaggagaaagcatgggaccaagccgtttttaa |
26064658 |
T |
|
| Q |
108 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
207 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| || | |||||||||| |
|
|
| T |
26064657 |
cgaggaactcttttatccatcgcatcctggttatgacgggcttcatgctgctaaaaggactatggatatgtacctttttatgaatagtaaagttcttttc |
26064558 |
T |
|
| Q |
208 |
aagacggtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
307 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26064557 |
aagacagtgaggaacgatgctaaactcagtaaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttg |
26064458 |
T |
|
| Q |
308 |
aatattatgttaatgggaaacaagaggctctcaaaccttttcccgatggc |
357 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| || |||||| |
|
|
| T |
26064457 |
aatattatgttaatgggaaccaagatgctctcaaacctttccctgatggc |
26064408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 26036109 - 26035770
Alignment:
| Q |
8 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||| |||||| ||||||||||||| ||| ||||| |
|
|
| T |
26036109 |
gtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtcgcgacacggctttccaaggaggttgcatgggaccaagccgttttcaa |
26036010 |
T |
|
| Q |
108 |
cgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttc |
207 |
Q |
| |
|
||||||||| ||| |||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
26036009 |
cgaggaactattttatccgtcacaccctggttatgaagggcttcatgctgctagaagaactatggatatgtatctctttatgaacagcaaagttcttttc |
26035910 |
T |
|
| Q |
208 |
aagacggtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttg |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
26035909 |
aagacagtgaggaacgatgctaacctcagtaaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcg |
26035810 |
T |
|
| Q |
308 |
aatattatgttaatgggaaacaagaggctctcaaaccttt |
347 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26035809 |
aatattatgtcaatgggaaacaagatgctctcaaaccttt |
26035770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 214 - 406
Target Start/End: Complemental strand, 26075682 - 26075488
Alignment:
| Q |
214 |
gtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26075682 |
gtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaatatt |
26075583 |
T |
|
| Q |
314 |
atgttaatgggaaacaagaggctctcaaaccttttcccgatggcacacctcgataaccttgtt--tttgtctaagctgttgttcaaaaacttaac |
406 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||| | ||||| || |||||||||||||| |||| |
|
|
| T |
26075582 |
atgttaatgggaactaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaacataac |
26075488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 6773416 - 6773203
Alignment:
| Q |
22 |
agaccaaccattccttcaattgagcttttggaccgtgtggcagcatgactttcgaaggagaaggcatgggaccaagtcgtattcaacgaggaactctttc |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || || || | | ||||| || ||||| |||||||| |||| || || || || ||||| ||| |
|
|
| T |
6773416 |
agaccaacacttccttcaattgagcttttggatcgcgttgcggaccggctttctaaagagaaagcatgggatcaagcagtttttaatgaagaactttttt |
6773317 |
T |
|
| Q |
122 |
atccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaa |
221 |
Q |
| |
|
| || ||||||||||||||||| || ||||||||||| || ||||| |||||||| || |||||||||||||| | ||||| || ||||| ||||| || |
|
|
| T |
6773316 |
acccttcacatcctggttatgatggacttcatgctgcaaagagaacaatggatatgtacctttttatgaacagtaaggttctgtttaagactgtgagaaa |
6773217 |
T |
|
| Q |
222 |
cgatgctaacctca |
235 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
6773216 |
agatgctaagctca |
6773203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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