View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590-Insertion-11 (Length: 307)
Name: NF5590-Insertion-11
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 35 - 307
Target Start/End: Original strand, 45830026 - 45830298
Alignment:
| Q |
35 |
cttatttcaattctttgcagctcaatttaattggccattttcatgggttgaatgaggaagagaaaggagtcgtgggtccaagccgacatagatggaaact |
134 |
Q |
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| T |
45830026 |
cttatttcaattctttgcagctcaatttaattggccattctcatgggttgaatgaggaagagaaaggagttgtgggtccaagccgacatatatggaaatg |
45830125 |
T |
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| Q |
135 |
gtgttcttgactataaagaatttctggtaaaatatttcacttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaattacat |
234 |
Q |
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| T |
45830126 |
gtgttcttgactataaagaatttatggtaaaatatttcacttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaattacat |
45830225 |
T |
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| Q |
235 |
ttttccttggataaactatatctatgcaaccaatgactagaggcttagagtcaaccaatgactataaactata |
307 |
Q |
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| T |
45830226 |
ttttcctcagataaactatatatatgcaaccaatgactagaggcttagtgtcaaccaatgactataaactata |
45830298 |
T |
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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 42558076 - 42557882
Alignment:
| Q |
39 |
tttcaattctttgcagctcaatttaattggccattttcatgggttgaatgaggaagaga--aaggagtcgtgggtccaagccgacatagatggaaactgt |
136 |
Q |
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| T |
42558076 |
tttcaattctttacagctcaatttaattggtcattctcatgagttgaatgaggaagagataaaggagttgtgggtccaagctgacatagatggaaatggt |
42557977 |
T |
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| Q |
137 |
gttcttgactataaagaatttctggtaaaatatttcacttgaatgaatataatcaacaataaatcatacaagaaaagactctgaattttgaatta |
231 |
Q |
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| T |
42557976 |
gttcttgactataaagaatttctggtaaagtatttcacttgaaattatataaacaacaatctataatacaagaaaagactctgaattttgaatta |
42557882 |
T |
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