View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590-Insertion-6 (Length: 982)
Name: NF5590-Insertion-6
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 853; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 8 - 982
Target Start/End: Complemental strand, 48255132 - 48254172
Alignment:
| Q |
8 |
gtacataatgcacaaactttctactcttataactggcactaacaattttaaaatggttcgaaaattacgtctgctactgcatctaagtttagtcctttta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
48255132 |
gtacataatgcacaaactttctactcttataactggcactaacaattttaaaatggtttgaaaattacgtctggtactgcatctaagttta-tcctttta |
48255034 |
T |
|
| Q |
108 |
atttccttcgttaatatattaacatactattttcttttaattgttgctcagaaaccaaacttccatcaccagatatacttggaaaatctttgtatacatt |
207 |
Q |
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| T |
48255033 |
atttccttcgttaatatattaacatactaatttcttttaattgttgctcagaaaccaaacttccatcaccagatatacttggaaaatctttgtatacatt |
48254934 |
T |
|
| Q |
208 |
ttatattggccaaaatgatttcacttccaacctagcagtcattggcacaggtggtgtgcaagagtttctccctcaagttgtttcacaaattgccgctacc |
307 |
Q |
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| T |
48254933 |
ttatattggccaaaatgatttcacttccaacctagcagtcattggcacaggtggtgtgcaagagtttctccctcaagttgtttcacaaattgccgctacc |
48254834 |
T |
|
| Q |
308 |
attaaagtaagagtaacttatgtctattagttagtctcgagactcgacaccaatatagtgtgtgttcagttctgtggtgacaaaaattgttattaacttg |
407 |
Q |
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| T |
48254833 |
attaaagtaagagtaacttatgtctattagttat-----------gacaccaatatagtgtgt--tcagttctgtggtgacaaaaattattattaacttg |
48254747 |
T |
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| Q |
408 |
aaattttgctgactgaaatttgtaggagctatataatcttggtgggagaacatttatggtgcttaatcttgcaccagtagggtgctacccttcattctta |
507 |
Q |
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| T |
48254746 |
aaattttgctgactgaaatttgtaggagctatataatcttggtgggagaacatttatggtgcttaatcttgcaccagtagggtgctatccttcattctta |
48254647 |
T |
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| Q |
508 |
gtagaacttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcat |
607 |
Q |
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| T |
48254646 |
gtagaacttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcat |
48254547 |
T |
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| Q |
608 |
tgaaacaaaccagagaaagtctctcagatgcttctgtcatatatgtcgatacctacaccgttctgttggagcttttccggcatcctacttctcatggttc |
707 |
Q |
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| T |
48254546 |
tgaaacaaaccagagaaagtatctcagatgcttctgtcatatatgtcgatacctacaccgttctgttggagcttttccggcatcctacttctcatggttc |
48254447 |
T |
|
| Q |
708 |
aaacacttatctcttggcttgttttaaaagaacattgttaatcgtaatgatcccttaaatgnnnnnnngtttcttacatgaaacaggtcttcaatatggt |
807 |
Q |
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| T |
48254446 |
aaacacttatcttttggcttgttttaaaagaacattgttaatcgtaatgatcccttaaatgtttttttgtttgttacatgaaacaggtcttcaatatggt |
48254347 |
T |
|
| Q |
808 |
acaaaagcatgttgtggatatggtggaggtgaatacaacttcgatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaa |
907 |
Q |
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| T |
48254346 |
acaaaagcatgttgtggatatggtggaggtgaatacaacttcaatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaa |
48254247 |
T |
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| Q |
908 |
cagcatgtgatgacccttacaactatgtgagttgggatgggattcatgctacagaagctgcaagcaagcttataa |
982 |
Q |
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| T |
48254246 |
cagcatgtgatgacccttacaactatgtgagttgggatgggattcatgccacagaagctgcaagcaagcttataa |
48254172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 39282245 - 39282357
Alignment:
| Q |
223 |
tgatttcacttccaacctagcagtcattggcacaggtggtgtgcaagagtttctccctcaagttgtttcacaaattgccgctaccattaaagtaagagta |
322 |
Q |
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|||||||||||||||| |||||||||| |||| |||| | ||||| |||| ||| | || |||| ||||||| ||||| || |||||||| ||||| || |
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| T |
39282245 |
tgatttcacttccaacgtagcagtcatcggcataggtagagtgcacgagtatctgcttctagttatttcacagattgctgccaccattaaggtaaggata |
39282344 |
T |
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| Q |
323 |
acttatgtctatt |
335 |
Q |
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| T |
39282345 |
ccttatgactatt |
39282357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 641
Target Start/End: Original strand, 10499539 - 10499723
Alignment:
| Q |
457 |
acatttatggtgcttaatcttgcaccagtagggtgctacccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttggatgcatgg |
556 |
Q |
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||||||||||| | ||||||| ||||| || ||||||||| || || || || |||||||||| |||||| ||| | || ||| ||||||||| |
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| T |
10499539 |
acatttatggtattaaatcttggtccagttggatgctaccctggatatttggtggagcttcctcatactagttctgacttagatgaacatggatgcataa |
10499638 |
T |
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| Q |
557 |
tttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtctctcagatgcttc |
641 |
Q |
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|| |||| |||||||| |||| || || |||||| ||||||||||| |||||| ||||| ||| ||||| | ||||||||||| |
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| T |
10499639 |
ttacttataacaatgctgtagatgattacaacaaattgttgaaagagacattgactcaaactagaaaaagtttatcagatgcttc |
10499723 |
T |
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