View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_high_14 (Length: 255)
Name: NF5590_high_14
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_high_14 |
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| [»] chr2 (8 HSPs) |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 8405441 - 8405677
Alignment:
| Q |
19 |
gtatagaaagtttcttttctacaaagtcatgtaacttacaaagaatgaaagaataacacattaaaaaatgaattgaatgatttatatgtcttagaatatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
8405441 |
gtatagaaagtttcttttctacaaagtcatgtaacttacaaagaatgaaagaataacacattaaaaaatgaattaaataatttatatgtcttagaatatt |
8405540 |
T |
|
| Q |
119 |
ttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaag |
218 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
8405541 |
ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaag |
8405640 |
T |
|
| Q |
219 |
ccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8405641 |
ccattttcatttcaaatagctctccattttctctttt |
8405677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 8396124 - 8395895
Alignment:
| Q |
25 |
aaagtttcttttctacaaagtcatgtaacttacaaagaatgaaagaataacacattaaaaaatgaattgaatgatttatatgtcttagaatattttgctg |
124 |
Q |
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||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
8396124 |
aaagtttcttttctataaagtcaggtaact-acaaagaatgaaagaataacacattaaaaaatgaattaaataatttatatgtcttagaatattttgctt |
8396026 |
T |
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| Q |
125 |
gcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaagccattt |
224 |
Q |
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| T |
8396025 |
gcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattt |
8395926 |
T |
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| Q |
225 |
tcatttcaaatagctctccattttctctttt |
255 |
Q |
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| T |
8395925 |
tcatttcaaatagctctccattttctctttt |
8395895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 103 - 255
Target Start/End: Original strand, 8430796 - 8430948
Alignment:
| Q |
103 |
tatgtcttagaatattttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacactt |
202 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
8430796 |
tatgtcttagaaaattttgctggaaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacactt |
8430895 |
T |
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| Q |
203 |
cttcccaactgcaaagccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8430896 |
tttcccaattgcaaagccatcttcatttcaaatagctctccattttctctttt |
8430948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 8376345 - 8376209
Alignment:
| Q |
119 |
ttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaag |
218 |
Q |
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||||||||||||||||| || || | ||||||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
8376345 |
ttgctggcaaattcatcaatttcgataccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaag |
8376246 |
T |
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| Q |
219 |
ccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8376245 |
ccattttcatttcaaatagctctccattttctctttt |
8376209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 8416745 - 8416881
Alignment:
| Q |
119 |
ttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaag |
218 |
Q |
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||||||| |||||||||||||||||||||||| || ||| ||| ||||||||||| ||| |||| ||||||||||||||| |||||||||| ||||||| |
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| T |
8416745 |
ttgctggaaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgtggcacgttccctcagctctgatacatttcttcccaattgcaaag |
8416844 |
T |
|
| Q |
219 |
ccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8416845 |
ccattttcatttcaaatagctctccattttctctttt |
8416881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 8411661 - 8411797
Alignment:
| Q |
119 |
ttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaag |
218 |
Q |
| |
|
|||||||||||||||||||| || | || |||||| ||| ||| |||||||||||| |||||||| |||||||||| |||||||||||||| |||||| |
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| T |
8411661 |
ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaag |
8411760 |
T |
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| Q |
219 |
ccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
8411761 |
ccattttcaattcaaatagctctccattttctctttt |
8411797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 8433759 - 8433895
Alignment:
| Q |
119 |
ttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaag |
218 |
Q |
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|
|||||||||||||||||||| || | || |||||| ||| ||| |||||||||||| |||||||| |||||||||| |||||||||||||| |||||| |
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| T |
8433759 |
ttgctggcaaattcatctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaag |
8433858 |
T |
|
| Q |
219 |
ccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
8433859 |
ccattttcaattcaaatagctctccattttctctttt |
8433895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 8401418 - 8401363
Alignment:
| Q |
199 |
acttcttcccaactgcaaagccattttcatttcaaatagctctccattttctcttt |
254 |
Q |
| |
|
|||||||||||| | |||||||| ||| |||||||||| |||||||||||||||| |
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|
| T |
8401418 |
acttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctcttt |
8401363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 177 - 41
Alignment:
| Q |
119 |
ttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaag |
218 |
Q |
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|
|||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
177 |
ttgctggcaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaag |
78 |
T |
|
| Q |
219 |
ccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
77 |
ccattttcatttcaaatagctctccattttctctttt |
41 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 55330474 - 55330601
Alignment:
| Q |
125 |
gcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaagccattt |
224 |
Q |
| |
|
||||||||||| | |||| |||| ||||||| ||| | |||||||||| ||||| ||||||| ||| || ||| ||||||||||| ||||||||||| |
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| T |
55330474 |
gcaaattcatcaacatcaattcctttcattcgacaagaacctgattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattt |
55330573 |
T |
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| Q |
225 |
tcatttcaaatagctctccattttctct |
252 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
55330574 |
tcatttcaaataactctccattttctct |
55330601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 55335899 - 55336036
Alignment:
| Q |
118 |
tttgctggcaaattcatctatgtcaacaccttccattcgataagcagctgattttgatgcaagttctctcagctctgatacacttcttcccaactgcaaa |
217 |
Q |
| |
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||||||||||||||||||||| || |||||||| | | | ||||| |||||||| ||||||| ||| ||||| || ||||||||||| ||| ||| |
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| T |
55335899 |
tttgctggcaaattcatctatagaaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaat |
55335998 |
T |
|
| Q |
218 |
gccattttcatttcaaatagctctccattttctctttt |
255 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||||| |
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| T |
55335999 |
gccattttcatttcaaatatctcaccattttctctttt |
55336036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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