View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5590_low_1 (Length: 560)
Name: NF5590_low_1
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 524
Target Start/End: Complemental strand, 30516080 - 30515578
Alignment:
| Q |
17 |
attaagtatctgaaaactttgcaaggaggaaaaggtggtaattgagtgcttgatggaggctgaaaagtttgttgttagaaaaatattgaagggcttaaag |
116 |
Q |
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| T |
30516080 |
attaagtatctgaaaactttgcaaggaggaaaaggtggtaattgagtgcttgatggaggctgaaaagtttgttgttagaaaaatattgaagggcttaaag |
30515981 |
T |
|
| Q |
117 |
gaaagggagagagatccatgcatattcttttgaatgctgaaagctgatcccttttaaaaaatggtgtctttattttaannnnnnn-ataaaggaatgtga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30515980 |
gaaagggagagagatccatgcatattcttttgaatgctgaaagctgatcccttttaaaaaatggtgtctttattttaattttttttataaaggaatgtga |
30515881 |
T |
|
| Q |
216 |
ttgtggagtagtgggggcaaagcaaaggacaagtctgggaactccattattgcatactttcatctcgttgtctttctcaaactgggcttaattaaaggaa |
315 |
Q |
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| T |
30515880 |
ttgtggagtagtgggggcaaagcaaaggacaagtttgggaactccattattgcatactttcatctcgttgtctttctcaaactgggcttaattaaa---- |
30515785 |
T |
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| Q |
316 |
aagacaannnnnnnnncaagtgacataaaaagcctatagattaaaataaataaattaatgtacctttttcatttcattcatcctgcaatgcttacttgta |
415 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30515784 |
-agacaatttttttt-caagtgacataaaaagcctatagattaaaataaataaattaatgtacctttttcatttcattcatcctgcaatgcttacttgta |
30515687 |
T |
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| Q |
416 |
gtacaacgagattggctaaaattttatgcatgcataagaatggacctaagaagatcgaggaggcacattacatttttcatatttatcgtgtaagttcttc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30515686 |
gtacaacgagattggctaaaattttatgcatgcataagaatggacctaagaagatcgaggaggcacattacatttttcatatttatcgtgtaagttcttc |
30515587 |
T |
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| Q |
516 |
ttttcttcc |
524 |
Q |
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| T |
30515586 |
ttttcttcc |
30515578 |
T |
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