View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5590_low_10 (Length: 338)
Name: NF5590_low_10
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_10 |
 | |
|
| [»] chr2 (14 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 28 - 338
Target Start/End: Complemental strand, 8406034 - 8405724
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
8406034 |
aatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctt |
8405935 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatt |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8405934 |
tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatggtagttctttggctgcatt |
8405835 |
T |
|
| Q |
228 |
tgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
8405834 |
tgttcctctcttggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggt |
8405735 |
T |
|
| Q |
328 |
ttcttcaactt |
338 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8405734 |
tttttcaactt |
8405724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 338
Target Start/End: Original strand, 8395538 - 8395848
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
8395538 |
aatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctt |
8395637 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatt |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8395638 |
tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatggtagttctttggctgcatt |
8395737 |
T |
|
| Q |
228 |
tgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
8395738 |
tgttcctctcttggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtatagagcttctgatggt |
8395837 |
T |
|
| Q |
328 |
ttcttcaactt |
338 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8395838 |
ttattcaactt |
8395848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 28 - 338
Target Start/End: Complemental strand, 8412151 - 8411844
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8412151 |
aatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgt |
8412052 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatt |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | || || |||||||||||||||||| |
|
|
| T |
8412051 |
tgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacatttgtaggcaa---tagttctttggctgcatt |
8411955 |
T |
|
| Q |
228 |
tgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggt |
327 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
8411954 |
tgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggt |
8411855 |
T |
|
| Q |
328 |
ttcttcaactt |
338 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8411854 |
tttttcaactt |
8411844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 28 - 338
Target Start/End: Complemental strand, 8434249 - 8433942
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8434249 |
aatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgt |
8434150 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatt |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | || || |||||||||||||||||| |
|
|
| T |
8434149 |
tgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacatttgtaggcaa---tagttctttggctgcatt |
8434053 |
T |
|
| Q |
228 |
tgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggt |
327 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
8434052 |
tgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggt |
8433953 |
T |
|
| Q |
328 |
ttcttcaactt |
338 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8433952 |
tttttcaactt |
8433942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 28 - 338
Target Start/End: Original strand, 8375855 - 8376162
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
8375855 |
aatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcat |
8375954 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatt |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || ||||||||||||| || |
|
|
| T |
8375955 |
tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacatttgtaggta---gtggttctttggctgcttt |
8376051 |
T |
|
| Q |
228 |
tgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggt |
327 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
8376052 |
tgttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggt |
8376151 |
T |
|
| Q |
328 |
ttcttcaactt |
338 |
Q |
| |
|
||||||||||| |
|
|
| T |
8376152 |
ttcttcaactt |
8376162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 8431312 - 8430995
Alignment:
| Q |
6 |
gtccaagaatataggaaaaatgaatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattat |
105 |
Q |
| |
|
|||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8431312 |
gtccaataaaataggaaaaatgaacgaatggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattat |
8431213 |
T |
|
| Q |
106 |
gacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggta |
205 |
Q |
| |
|
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| | |
|
|
| T |
8431212 |
gatagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatctacatttattggca |
8431113 |
T |
|
| Q |
206 |
atggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttga |
305 |
Q |
| |
|
| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8431112 |
a---tagttctttggctgcttttgttcctct------------attggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttga |
8431028 |
T |
|
| Q |
306 |
aatgtataaaacttcttctggtttcttcaactt |
338 |
Q |
| |
|
|||||||| | ||||| ||||||| |||||||| |
|
|
| T |
8431027 |
aatgtatagagcttctgctggttttttcaactt |
8430995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 63 - 311
Target Start/End: Complemental strand, 8417197 - 8416952
Alignment:
| Q |
63 |
ggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggcca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||| || |||||||||| ||||||||||||||| |
|
|
| T |
8417197 |
ggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggcca |
8417098 |
T |
|
| Q |
163 |
ttgctcacaggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctg |
262 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| || |||| | ||||||||||| ||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
8417097 |
ttactcacaggaattgccgctattggatctacatttataggcaatg---gctctttggctgcctttgttcctctattggctggttcattggcttctgcag |
8417001 |
T |
|
| Q |
263 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8417000 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 8439248 - 8439085
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
8439248 |
aatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcat |
8439149 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatc |
191 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8439148 |
tgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatc |
8439085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 8417366 - 8417201
Alignment:
| Q |
31 |
ggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttga |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8417366 |
ggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttga |
8417267 |
T |
|
| Q |
131 |
agataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacat |
196 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
8417266 |
aggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacat |
8417201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 313
Target Start/End: Complemental strand, 8368357 - 8368120
Alignment:
| Q |
73 |
gaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacag |
172 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||| ||| | |||||| | | |||||||||||| |||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
8368357 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggctattgcaggaccattactcactg |
8368258 |
T |
|
| Q |
173 |
gaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttt |
272 |
Q |
| |
|
||||||||||| | || || |||||| ||||| | ||| || ||||| | | || ||| | ||||||| |||||||| ||||||||||| |||| |
|
|
| T |
8368257 |
gaattgcagctgtggggtccacatttgttggtcaaggt---tcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttt |
8368161 |
T |
|
| Q |
273 |
tgagcatggtggacaagttggcatggtttttgaaatgtata |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8368160 |
tgagcatggtggacaagttggtatggtttctgaaatgtata |
8368120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 8401053 - 8401290
Alignment:
| Q |
73 |
gaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacag |
172 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||| ||| | |||||| | | |||||||||||| |||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
8401053 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggctattgcaggaccattactcactg |
8401152 |
T |
|
| Q |
173 |
gaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttt |
272 |
Q |
| |
|
||||||||||| | || || |||||| ||||| | ||| || ||||| | | || ||| | ||||||| |||||||| ||||||||||| |||| |
|
|
| T |
8401153 |
gaattgcagctgtggggtccacatttgttggtcaaggt---tcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttt |
8401249 |
T |
|
| Q |
273 |
tgagcatggtggacaagttggcatggtttttgaaatgtata |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8401250 |
tgagcatggtggacaagttggtatggtttctgaaatgtata |
8401290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 8422630 - 8422867
Alignment:
| Q |
73 |
gaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacag |
172 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||| ||| | |||||| | | |||||||||||| |||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
8422630 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggctattgcaggaccattactcactg |
8422729 |
T |
|
| Q |
173 |
gaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttt |
272 |
Q |
| |
|
||||||||||| | || || |||||| ||||| | ||| || ||||| | | || ||| | ||||||| |||||||| ||||||||||| |||| |
|
|
| T |
8422730 |
gaattgcagctgtggggtccacatttgttggtcaaggt---tcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttt |
8422826 |
T |
|
| Q |
273 |
tgagcatggtggacaagttggcatggtttttgaaatgtata |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8422827 |
tgagcatggtggacaagttggtatggtttctgaaatgtata |
8422867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 8403845 - 8403793
Alignment:
| Q |
261 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtata |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8403845 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtata |
8403793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 8404032 - 8403918
Alignment:
| Q |
71 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
170 |
Q |
| |
|
|||||||| | |||||||||||| |||| |||||||| ||| | || || || || || ||||| ||||||||||| |||||| ||| || ||| | || |
|
|
| T |
8404032 |
ttgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaac |
8403933 |
T |
|
| Q |
171 |
aggaattgcagctat |
185 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8403932 |
aggaattgcagctat |
8403918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 55336396 - 55336242
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||| ||||| ||||||||||| ||||| | |
|
|
| T |
55336396 |
aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat |
55336297 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagc |
182 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| ||||| ||||| ||||||||||| |
|
|
| T |
55336296 |
tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagc |
55336242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 55330958 - 55330788
Alignment:
| Q |
28 |
aatggatggagtgaagaattagaaatggaaatgagggaagttgttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgt |
127 |
Q |
| |
|
|||||||||||||| |||||||||| |||| |||| |||||| ||||||| | || | |||||| ||||||||||||| ||||||||||| ||||| | |
|
|
| T |
55330958 |
aatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatagcat |
55330859 |
T |
|
| Q |
128 |
tgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacattt |
198 |
Q |
| |
|
| ||| | || |||||||| |||| ||| || ||||| ||||| |||||||||||||| || ||| ||||| |
|
|
| T |
55330858 |
taaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctataggttctgcattt |
55330788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 55336151 - 55336108
Alignment:
| Q |
270 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtata |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtata |
55336108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 55330750 - 55330676
Alignment:
| Q |
239 |
tggctggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtata |
313 |
Q |
| |
|
||||||||||||| | | ||| || ||| ||||||| |||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
55330750 |
tggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtata |
55330676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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