View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5590_low_11 (Length: 309)
Name: NF5590_low_11
Description: NF5590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5590_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 52715384 - 52715231
Alignment:
| Q |
150 |
ggtaagctatgtaatttatattaaaatttataattctaatacctttatttctaaatataagatgttatctttacttttcatatctttcctttgcaaatat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
52715384 |
ggtaagctatgtaatttatattaaaatttataattctaatacctttatttctaaatataagatgttatctttacttttcatatcttttctttccaaatat |
52715285 |
T |
|
| Q |
250 |
aatatacattctcttactttatacnnnnnnnccttctatatgtcgagtgtagat |
303 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
52715284 |
aatatacattctcttactttgtactttttttccttctatatgtcgagtgtagat |
52715231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52715535 - 52715443
Alignment:
| Q |
1 |
ttgccactaagctaaaggctcaaactttaaatttcttcgttcaaaagcatata--tataagacttaaattgaaatattgtgttttttaagggg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52715535 |
ttgccactaagctaaaggctcaaactttaaatttcttcgttcaaaagcatatatatataagacttaaattgaaatattgtgttttttaagggg |
52715443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 42132041 - 42132145
Alignment:
| Q |
165 |
ttatattaaaatttataattctaatacctttatttctaaatataagatgttatctttacttttcatatctttcctttgcaaatataatatacattctctt |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||| | |
|
|
| T |
42132041 |
ttatattgaaatttataattctaatacctttatttctaaatataagacgttatctttaattttcatgtcttctttttgcaaatataatatacattctcct |
42132140 |
T |
|
| Q |
265 |
acttt |
269 |
Q |
| |
|
||||| |
|
|
| T |
42132141 |
acttt |
42132145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42131854 - 42131890
Alignment:
| Q |
21 |
caaactttaaatttcttcgttcaaaagcatatatata |
57 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
42131854 |
caaactttaaatttcttcattcaagagcatatatata |
42131890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 10601284 - 10601347
Alignment:
| Q |
15 |
aaggctcaaactttaaatttcttcgttcaaaagcatatatataagacttaaattgaaatattgt |
78 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||||||||||||||||| | ||||||||| |
|
|
| T |
10601284 |
aaggctcaaactttaaatttcttcattcaagagcgtatatataagacttaaactcaaatattgt |
10601347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 269
Target Start/End: Complemental strand, 23628921 - 23628890
Alignment:
| Q |
238 |
ctttgcaaatataatatacattctcttacttt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23628921 |
ctttgcaaatataatatacattctcttacttt |
23628890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University